Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03646 ATGATAAGAGGAGGAAATTATGGTGTCAATAGCGTTAAAATCTTTGGCAATGAAAATATAAATTACATTGACCCTTTCATGGATAGATTCTCATGGGGCCAAATGACTCACTACCCTAACTATCAACAAAATAGTGCTAGTGTTTTTCCTTACTCTTATGGTTCAAACTATGAGTTTATGTGGCCAAATGCTCAAGAATCAATTGATGGGGTTAATTTAGCAAATGAAGAGGCTTTGGAGTGGACTAACTTCAACCAAAACCCTACATTGTGCCTTAAGGATATTCATGGTTATGGTGAACACACCGAAATTTTGCGAAGGAAGGGTACGAAAGATACTTCTATGGTTTTGATCAAAGGACAATGGACAAAAGAAGAAGACAGGAAATTGATAAGGCTGGTGAAGCAATATGGTGAAAGAAAATGGGCTAAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCAGATATTAAGAAGGATAATTGGAGCGAAGAAGAAGAGAAGATATTAGTAGCCACACATGCAAAAATTGGAAACCGTTGGGCTGAGATCGCAAAGAAAATTCCGGGAAGAACAGAAAATGCCATAAAAAATCATTGGAATGCTACAAAAAGAAGACAAAACTCGAGAAGAAAGAACAAGAAGAATGAAACTTCTAATGGATCAAAACCAAAATCTTCTATACTTGAAGACTATATCAAAGAAACCAACACATCCATCACTACCAAAATTACCAACATACCCTCTTCCTCTCATTCAACACTCTCTCAAATCCTTGAAGAAAATCAACCAAACCTTTTGTACAATGAATTACCCTCTGATTCTTTTTCCAATGAATATTTGAATTATTTTCAAGGTAATATTGTTGATGATATAAATGAGAGTGGGCATGTTAATTCAATCCATCAATACCCAAATTACAACATCCACTTGGATGAGACTTCTCCTATGAACAATTTCCTTTCTTATGATCTTTACCTCTCTCAATTCTTGAACTTATAG 1038 0.3584 MIRGGNYGVNSVKIFGNENINYIDPFMDRFSWGQMTHYPNYQQNSASVFPYSYGSNYEFMWPNAQESIDGVNLANEEALEWTNFNQNPTLCLKDIHGYGEHTEILRRKGTKDTSMVLIKGQWTKEEDRKLIRLVKQYGERKWAKIAEKLEGRVGKQCRERWHNHLRPDIKKDNWSEEEEKILVATHAKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKNETSNGSKPKSSILEDYIKETNTSITTKITNIPSSSHSTLSQILEENQPNLLYNELPSDSFSNEYLNYFQGNIVDDINESGHVNSIHQYPNYNIHLDETSPMNNFLSYDLYLSQFLNL 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03646 345 CDD SANT 122 165 IPR001005 -
Trre10g03646 345 MobiDBLite consensus disorder prediction 204 241 - -
Trre10g03646 345 ProSiteProfiles Myb-like domain profile. 166 216 IPR001005 -
Trre10g03646 345 SMART sant 170 218 IPR001005 -
Trre10g03646 345 SMART sant 118 167 IPR001005 -
Trre10g03646 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 114 169 IPR017930 -
Trre10g03646 345 PANTHER MYB PROTEIN-RELATED 103 237 - -
Trre10g03646 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 170 220 IPR017930 -
Trre10g03646 345 Gene3D - 118 170 - -
Trre10g03646 345 SUPERFAMILY Homeodomain-like 118 212 IPR009057 -
Trre10g03646 345 Gene3D - 172 242 - -
Trre10g03646 345 CDD SANT 173 216 IPR001005 -
Trre10g03646 345 Pfam Myb-like DNA-binding domain 122 180 - -
Trre10g03646 345 ProSiteProfiles Myb-like domain profile. 119 165 IPR001005 -
Trre10g03646 345 FunFam Transcriptional activator Myb isoform A 118 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03646 Trre-Chr10 45931174 45934157 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03646 103 344 MYB Transcription Factor Family AT5G58850 46.735 1.16e-69 222
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre10g03646 Myb_DNA-bind_6 1.6e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03646 K09422 - aprc:113874412 311.612