Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03642 ATGGAGACTCTCCCTCTTCTCCTTACCCTAACAGCTGCCCTCTCTGCCTATTTCCTTTGGTTCCACTTCCTCGCTCGAACCCTAACCGGTCCAAAAGCATGGCCATTCGTTGGTAGTCTCCCGGTCCTTTTCAAAAACCGAAATCAAGTTCATGATTGGATTGCTGGTAACCTCCGTGCAACCGGAGGTTCAGCCACCTACCAAACATGCATCATCCCTCTCCCTTTCTTGGCTCACAAGCAAGGGTTCTACACCGTCACATGTCACCCTAAAAACCTCGAACACATCCTCAAAACCCGGTTCGATAATTACCCGAAAGGACCTAAATGGCAAACCGCATTCCACGATCTTTTAGGCCAAGGGATTTTCAATAGTGACGGTGAAACATGGCTAATGCAACGTAAAACCGCGGCTCTTGAATTCACAACACGGACATTGAAACAAGCTATGGCTCGATGGGTGAACCGGTCTATTAAGAACCGGTTATGGTGTATTTTGGATAAATCGGTTAAAGATAATGTTTATGTGGATTTACAAGATCTTTTGTTACGATTAACATTTGATAATATTTGTGGACTTACATTTGGTAAAGATCCTGAAACTCTTTCACCAAATTTACCTGAAAACCCTTTTGCTATTGCTTTTGACACCGCCACTGAAGCTACCATGCACAGGTTCCTCTACCCAGGCTTAATATGGAGGTTCCAGAAAATTTTCGGTATAGGATCCGAAAAAATGCTAAAAGAAAGTCTCCAAATCGTCGAAACATATATGAACAATGCCGTTTCAGATCGTAAAGGAATCCCTTCCGATGACCTAATGTCACGTTTCATGAAAAAACGCGACATCGATGGAAAACCAATTTCCGCCCCAGTACTCCAGCGCATCATCTTAAGCTTCATCCTAGCTGGAAGAGACACGTCATCCGTAGCTCTTAGCTGGTTCTTCTGGCTCATCATGAATCATCCTAGTGTGGAGGAGAAGATAATCAAGGAGTTAACGACAGTTTTAGAGAAAACTCGCGGTGGAGAACCGCAGAGATGGAAGGAGGATCCCATTGATTTCGGGGAAGCGGATCGGTTGGTTTATTTAAAGGCGGCATTGGCTGAAACACTACGGTTGTACCCATCAGTGCCACAAGATTTTAAACAAGCGGTTGCTGATGATGTTTTACCGGATGGAACAGTGGTTCCAGCCGGTACAACAGTTACGTATTCAATATATTCGGTTGGAAGGATGGAAACAATATGGGGTGAGGATTGTTTGGAATTTAAGCCAGAGAGATGGATATCGGTTCGAGGTGACCGGTTCGAACCGCCAAAAAATGGGTTCATGTTTATGGCTTTTAATGCTGGACCAAGAATTTGTTTGGGGAAGGATTTAGCTTATTTACAAATGAAGTCTGTTGCTGCTGCTGTTCTTTTGCGATACCGGCTATCGCCGGTTCCCGGTCACCGAGTTGAGCAAAAAATGTCTCTTACTTTGTTTATGAAGAATGGGCTTAAGGTTTTCTTGCAGCCACGTAAGCTTTAA 1533 0.4416 METLPLLLTLTAALSAYFLWFHFLARTLTGPKAWPFVGSLPVLFKNRNQVHDWIAGNLRATGGSATYQTCIIPLPFLAHKQGFYTVTCHPKNLEHILKTRFDNYPKGPKWQTAFHDLLGQGIFNSDGETWLMQRKTAALEFTTRTLKQAMARWVNRSIKNRLWCILDKSVKDNVYVDLQDLLLRLTFDNICGLTFGKDPETLSPNLPENPFAIAFDTATEATMHRFLYPGLIWRFQKIFGIGSEKMLKESLQIVETYMNNAVSDRKGIPSDDLMSRFMKKRDIDGKPISAPVLQRIILSFILAGRDTSSVALSWFFWLIMNHPSVEEKIIKELTTVLEKTRGGEPQRWKEDPIDFGEADRLVYLKAALAETLRLYPSVPQDFKQAVADDVLPDGTVVPAGTTVTYSIYSVGRMETIWGEDCLEFKPERWISVRGDRFEPPKNGFMFMAFNAGPRICLGKDLAYLQMKSVAAAVLLRYRLSPVPGHRVEQKMSLTLFMKNGLKVFLQPRKL 510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03642 510 CDD CYP86A 70 501 - -
Trre10g03642 510 PANTHER CYTOCHROME P450 22 503 - -
Trre10g03642 510 Gene3D Cytochrome P450 24 510 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 SUPERFAMILY Cytochrome P450 28 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 FunFam Cytochrome P450 22 510 - -
Trre10g03642 510 Pfam Cytochrome P450 85 498 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS E-class P450 group I signature 446 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS E-class P450 group I signature 365 383 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS E-class P450 group I signature 456 479 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS E-class P450 group I signature 292 309 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 449 458 IPR017972 GO:0005506|GO:0016705
Trre10g03642 510 PRINTS P450 superfamily signature 456 467 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS P450 superfamily signature 447 456 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS P450 superfamily signature 303 320 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Trre10g03642 510 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03642 Trre-Chr10 45916850 45919018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03642 1 508 Cytochrome P450 AT5G58860 74.118 0.0 803
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03642 K15401 - gmx:100788343 898.656