Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03628 ATGGTTGAGGCTTTACTTGAAGTTGTGTTGGAGAATTTGGTATCTCTACTTCGTAATGAATTTTCCACAATTTATAGAATCAAGTCTAAGGCTCAAAATCTTTCAAATACCTTAGAACTCATCAACGCTGTTCTTGAAGATGCTGAGCAAAAACAAGTCAAAGACCGTTCAATTAAGGTGTGGCTACAACAACTCAAAGACGCAGTTTATGTGCTCGATGATATGCTTGACGAATGTTCCATTCAATCCAATCGACTTAAGGGTGCATCCTCTTTAAAACCAAAGAACATTATGTTTCGCTACAACATTGGCAACAAGTTTAAAGAGATTCCAAAGAGATTTGATCAAATTGCTGAAAGTAAGAACAAGTTCGTTCTACGAGTGGGTGTTAATGTTAGAGAATGGCCGATTGAAGTGGCTGAATGGCGCCAAACTAGTTCGACTATTGCTGGACCGAAAGTGTATGGACGAGAAGATGATAAAGAGAAGATTGTTGAGTTTCTTCTCACCCAAGTAAGGGACTCTGACTTCCTTTCTGTCTATCCAATTGTTGGCTTAGGTGGTGTTGGTAAAACAACACTTGCTCAATTGGTCTACAATGATCATAGGGTGAGTAGCAATTTTCATACAAAAGTTTGGGTTTGTGTTTCTGAGATTTTCTCTGTCAAGAGGATTTTGTGTTCTATTATAGAATCTATAACTAGAGAAAAATGTGATGCCTTGGATTTAGATGTGTTTGAAAGAAAAGTGCAAGAACTGTTGCAAGGTAAAAGATATTTGTTGGTTTTGGATGATGTATGGAATAGAAATCAAGGATTGGAATTTGGATTAAGCCAAGACAAATGGCATAAGTTGAAATCTGTATTGTCGTGTGGATCCAAAGGTTCTTCCATTTTGGTTTCCAGTCGTGATAAGGATGTTGCGGAAATCACGGGAACATGCCAATTTCATCATTTATCTGGTCTCTCCGATAATGAATGTTGGTTGTTGTTTAAACAATATGCATTTGGACATGATGAAGGAGAGAAGGAAGAGCTTGAGGCAATAGGCAAGGAGATAGTAAAGAAGTGTGGGGGATTGCCTCTTGCGGCACAAGCATTGGGAGGTCTAATGCGATCAAGGAGTGGAGAAAAGGAATGGCTTGAAGTTAAGGAGAATAGGCTTTGGTCTTTACCAGATCAGAATTATATTTTGCCTGCCTTGAGTTTAAGCTACTTATATTTAACACCGGCCTTAAAGCAGTGTTTTGCTTTTTGTGCCATGTTTCCTAAAGATACTGAAATTGTGAAGGCAGATTTGATTCATCTCTGGATGTCCAATGGGTTCATTTCATCAAGGAAAAATTTGGATGTAGAAGATGTTGGAAATATGATTTTGAATGAATTGTGCCAAAAGTCATTCTTCCAAGATATCAAGATGAATGATTATTCGGAAGACATTTGTTTCAAAATGCATGATCTTGTCCATGATCTTGCTCAATCAGTTATGGGATCAGAATGTCTATTTTTAGAAAATGGAGACATGAGTGGTTTGTCAAAGAGCACTCACCATATTAGTTTAAAACCGGCTGGCTTGTTATCATTTGATGAGGGTGCGTTCAAAAAAGTTGAATCCTTGCGAACATGGTATCAGTTAAAATTTTACAACCCTAAATTTTTTACTTACTTCCCAACCAGTCGTTCTCTTCGGGTTTTATGCACAAGCAGTTTCAAGTTATCATCATGCGGAAGTTTAATACATTTGAGGTATTTGGAGCTTTATGATTTTGATGGTATAGAAACCATTCCTGACTCAATCTATAACTTGCAGAAATTGGAAATTTTGAAATTAAAATGTTTTTTAAAACTGAATTGTCTACCGACACACTTGACTCGCTTAAAATATCTCAGACATCTTATCATTCAAAACTGTTTGTCATTGTCTCGTGTGTCTCCTTTCATTGGAAAATTATCTTGCTTAAGAACACTAAGTGTATACATTGTTGGTTTAGAGACAGGACACAACCTGGCAGAGTTACATGATCTAAAGCTAGGAGGAAAACTAAGCATAGAAGGCCTTAAAAATGTCGGTAGTTTATCTGATGCTCAAGATGCAAATTTGATGGGCAAAAAAGACCTCCAGGTATTATGCTTGTCATGGGGAAATAGTGGTGAAATCAAGACACCTATTATTAGTCCTAAACAAGTACTTGAAGTGCTTCAACCTCACTCAAATGTCAAGAGCTTGACAATACGTTTCTATGATGGATTGTGCTTCCCAACTTGGATTGGAATACTGAGGAGTTTAGTTTCTCTAGTATTTCATTGTTGCACGAACTGCATACGACTTCCACCCATAGGTAATCTACCATTTCTGAAAAACCTTGAATTATTTAATATGGATTATCTGCAGTATATGGATGATGATGATGAATCTGTCAATGGTGTGGAGGTGAGGACTTTTCCGTCCCTGGAGAATCTCTCATTATATAGGTTACCAAATTTAGAGAAATTGTTGAAAGTGGATAGAAGCGAAATGTTCCCCCGTCTTTCTAATTTGACCATCAACTGTTGCCCTAAACTTGTATTGCCATGCCTCCCATCTGCTAAATACCTCTCTGTGTTTGGTTGTAACAATGAGATACTGGTCTCAATCTTTAGTTTTTCTGGTCTTACAACTCTTCAACTTGATGCAAATGAAGACATGACATCCTTCCGAGAGGGCATGTTAAGAAATATGGCTTGTCTTCATACTCTTAAAATAATTGGTTTCACAGAATTGAAGGAATTACCAAATGATTTCTTCAATCCAGCTTTGGAGCATCTACAAATATCTTATTGTGGTAAGCTTGAGTCTCTACCAGAGAAAATTTGGGAAGGCCTTAGATCGCTCCGGACGTTGAAGATTGATCTATGCGTAAGATTGAGATCCTTGCCAGAAAGTATTCGACACCTCATTTCACTGAAGGTTCTGCATATTCGTGGTTGCCCGATATTAAAGGAGCGATGCAAGGAGGAAATAGGGGAGGACTGGGACAAGATAGCACACATTCCGAATTTAATTATAGACTAG 3051 0.3769 MVEALLEVVLENLVSLLRNEFSTIYRIKSKAQNLSNTLELINAVLEDAEQKQVKDRSIKVWLQQLKDAVYVLDDMLDECSIQSNRLKGASSLKPKNIMFRYNIGNKFKEIPKRFDQIAESKNKFVLRVGVNVREWPIEVAEWRQTSSTIAGPKVYGREDDKEKIVEFLLTQVRDSDFLSVYPIVGLGGVGKTTLAQLVYNDHRVSSNFHTKVWVCVSEIFSVKRILCSIIESITREKCDALDLDVFERKVQELLQGKRYLLVLDDVWNRNQGLEFGLSQDKWHKLKSVLSCGSKGSSILVSSRDKDVAEITGTCQFHHLSGLSDNECWLLFKQYAFGHDEGEKEELEAIGKEIVKKCGGLPLAAQALGGLMRSRSGEKEWLEVKENRLWSLPDQNYILPALSLSYLYLTPALKQCFAFCAMFPKDTEIVKADLIHLWMSNGFISSRKNLDVEDVGNMILNELCQKSFFQDIKMNDYSEDICFKMHDLVHDLAQSVMGSECLFLENGDMSGLSKSTHHISLKPAGLLSFDEGAFKKVESLRTWYQLKFYNPKFFTYFPTSRSLRVLCTSSFKLSSCGSLIHLRYLELYDFDGIETIPDSIYNLQKLEILKLKCFLKLNCLPTHLTRLKYLRHLIIQNCLSLSRVSPFIGKLSCLRTLSVYIVGLETGHNLAELHDLKLGGKLSIEGLKNVGSLSDAQDANLMGKKDLQVLCLSWGNSGEIKTPIISPKQVLEVLQPHSNVKSLTIRFYDGLCFPTWIGILRSLVSLVFHCCTNCIRLPPIGNLPFLKNLELFNMDYLQYMDDDDESVNGVEVRTFPSLENLSLYRLPNLEKLLKVDRSEMFPRLSNLTINCCPKLVLPCLPSAKYLSVFGCNNEILVSIFSFSGLTTLQLDANEDMTSFREGMLRNMACLHTLKIIGFTELKELPNDFFNPALEHLQISYCGKLESLPEKIWEGLRSLRTLKIDLCVRLRSLPESIRHLISLKVLHIRGCPILKERCKEEIGEDWDKIAHIPNLIID 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03628 1016 Gene3D - 321 403 IPR042197 -
Trre10g03628 1016 Gene3D - 141 315 IPR027417 -
Trre10g03628 1016 Pfam Rx N-terminal domain 6 100 IPR041118 -
Trre10g03628 1016 Pfam NB-ARC domain 157 386 IPR002182 GO:0043531
Trre10g03628 1016 Gene3D - 6 118 - -
Trre10g03628 1016 PANTHER DISEASE RESISTANCE PROTEIN RP 33 851 IPR044974 GO:0006952
Trre10g03628 1016 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 141 419 IPR027417 -
Trre10g03628 1016 CDD RX-CC_like 3 119 IPR038005 -
Trre10g03628 1016 Gene3D Ribonuclease Inhibitor 856 1002 IPR032675 -
Trre10g03628 1016 FunFam Probable disease resistance protein At1g63360 405 494 - -
Trre10g03628 1016 Gene3D Ribonuclease Inhibitor 531 855 IPR032675 -
Trre10g03628 1016 Coils Coil 31 51 - -
Trre10g03628 1016 SUPERFAMILY L domain-like 471 1008 - -
Trre10g03628 1016 Gene3D - 404 495 IPR036388 -
Trre10g03628 1016 PRINTS Disease resistance protein signature 180 195 - -
Trre10g03628 1016 PRINTS Disease resistance protein signature 976 992 - -
Trre10g03628 1016 PRINTS Disease resistance protein signature 357 371 - -
Trre10g03628 1016 PRINTS Disease resistance protein signature 253 267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03628 Trre-Chr10 45853171 45856221 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03628 183 385 WRKY Transcription Factor Family AT5G45050 27.885 3.34e-09 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03628 - - mtr:11405813 1248.42