Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Trre10g03625 | ATGAAGTGGGAAATGGAAATTCTCCCTTCTACATCATTCACACCAAACACAAACACCAATTGGTGTATGGAAGATAACAATACAACAAAATGGACACCAGAAGAGAACAAACTATTTGAAAATGCTCTTGCAGTTCATGATAAGGATACACCAGATCGATGGCATAGAGTGGCGGAAATGATACCTGGAAAGACGGTCGGCGATGTGATGAGACAGTATAAGGAATTAGAAGATGATGTTTGTAATATTGAAGCTGGATTAATTCCAGTTCCTGGTTATAATACTCCAACTACTTCACCTTTTACCTTAGATTGGGTGAATAGTTCTAGTTATGATGGATTTAAAGGAAGTGGAAAGAGATCTCCTTTGGTTAGAGCAACTGAGCATGAAAGGAAGAAAGGTGTTCCATGGACTGAAGAAGAACACAAATTGTTTCTACTAGGTCTAAAGAAGTATGGTAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTCATCACAAGAACACCAACTCAAGTAGCTAGTCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGGAAAGACAAGAGAAGAGCTAGCATACATGACATAACAACAGTTAATCTCTCAGAAACTACTAGAACTTGTTCTTCAGAAGACACCAATAATAGATCCACTTCACCACAAAATTCCATGTTACTCTCACACCAACAGCAACAACCAAGTTCTACTAGTACAAATTTTCATTGGAGGAATAATCAACAAAATGCTATGGCTTTCAATCCAGCACATGAACAAGTTTTTATGGCTCCTAATGGTGTTAATTCCTATGAGATTAAAATGCAGGATCAAAATTTTCAAAAGGGTCTTGTTAATGAGTCTTCTTATCCTCACAACATGGTTTTCCAAATGCAACATTCATCACAACATTATTCACATGCATAA | 930 | 0.3688 | MKWEMEILPSTSFTPNTNTNWCMEDNNTTKWTPEENKLFENALAVHDKDTPDRWHRVAEMIPGKTVGDVMRQYKELEDDVCNIEAGLIPVPGYNTPTTSPFTLDWVNSSSYDGFKGSGKRSPLVRATEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNLSETTRTCSSEDTNNRSTSPQNSMLLSHQQQQPSSTSTNFHWRNNQQNAMAFNPAHEQVFMAPNGVNSYEIKMQDQNFQKGLVNESSYPHNMVFQMQHSSQHYSHA | 309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Trre10g03625 | 309 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 129 | 185 | IPR017930 | - | |
| Trre10g03625 | 309 | MobiDBLite | consensus disorder prediction | 207 | 241 | - | - | |
| Trre10g03625 | 309 | CDD | SANT | 30 | 76 | IPR001005 | - | |
| Trre10g03625 | 309 | ProSiteProfiles | Myb-like domain profile. | 129 | 181 | IPR001005 | - | |
| Trre10g03625 | 309 | ProSiteProfiles | SANT domain profile. | 29 | 79 | IPR017884 | - | |
| Trre10g03625 | 309 | FunFam | Transcription factor SRM1 | 23 | 90 | - | - | |
| Trre10g03625 | 309 | PANTHER | DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED | 24 | 262 | IPR043363 | - | |
| Trre10g03625 | 309 | ProSiteProfiles | SANT domain profile. | 137 | 185 | IPR017884 | - | |
| Trre10g03625 | 309 | SUPERFAMILY | Homeodomain-like | 131 | 184 | IPR009057 | - | |
| Trre10g03625 | 309 | Gene3D | - | 23 | 90 | - | - | |
| Trre10g03625 | 309 | ProSiteProfiles | Myb-like domain profile. | 23 | 77 | IPR001005 | - | |
| Trre10g03625 | 309 | Gene3D | - | 135 | 185 | - | - | |
| Trre10g03625 | 309 | Pfam | Myb-like DNA-binding domain | 136 | 181 | IPR001005 | - | |
| Trre10g03625 | 309 | Pfam | Myb-like DNA-binding domain | 29 | 74 | IPR001005 | - | |
| Trre10g03625 | 309 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 132 | 184 | IPR006447 | GO:0003677 | |
| Trre10g03625 | 309 | CDD | SANT | 136 | 181 | IPR001005 | - | |
| Trre10g03625 | 309 | FunFam | transcription factor MYB1R1 | 135 | 186 | - | - | |
| Trre10g03625 | 309 | SMART | sant | 133 | 183 | IPR001005 | - | |
| Trre10g03625 | 309 | SMART | sant | 27 | 79 | IPR001005 | - | |
| Trre10g03625 | 309 | SUPERFAMILY | Homeodomain-like | 29 | 84 | IPR009057 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Trre10g03625 | Trre-Chr10 | 45839005 | 45840637 | Dispersed/Wgd |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Trre10g03625 | Myb_DNA-binding | 1.5e-12 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Trre10g03625 | - | - | gmx:778034 | 431.409 |