Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03617 ATGAAGAAATCAGCAAGCACCAAATTGCAATATCAATCTAGTGAAAGAAAAAAGAATGGTAATTTTCAAGATAGTAAAGAAATTGAATCAACAAAGAAGCACAATCCTAAGACTAATTCAGCACTGAAAAGTTTCAAATCTGCTTTCAGAAAATTTGCTTTGATTTTCATTGGCAAAAGAAAAACAGCTTCAGAACTTATTGGAAGTGGTGACAGAAAAAATACATCAAAACCAAGATTGGTGGTATCATCTTCAACTGATTTATCATCTGGAAGTACTAACAAGAACTCATCAAATTGGAAATTTTCTTATTCCTATGCATCATCTAGTACTAAAAGTGAGCAGCTTGGAGTTGGAAATTTCACTTTTGACGAAATTTACAAGTCAACTGCAAAGTTCTCTCCAGATAATCAGATTGGTGAAGGTGGTTTTGGAACCGTCTATAGAGGAAAGCTTAATGATGGAACTATTGTCGCCGTGAAGCGTGCAAAGAAGGAAGCACTGCCGAGTCACCTATACGAGTTCAAGAACGAAATATACACTTTATCGAAAATTGAGCACCTGAATCTTGTGAGGTTATACGGATATTTGGAGCATGGAGACGAGAAGCTTATTGTTGTTGAGTATGTTGCTAATGGAAATCTTAGAGAACATTTAGATGGCATACGAGGCAATGGACTAGAAATCGGTGAACGTCTAGACATAGCAATCGATGTAGCTCATGCAATAACTTACCTTCATATGTACACAGATAATCCAATTATACATAGAGACATCAAAGCATCAAACATCTTAATTAGCGATAATCTAAGGGCTAAAGTGGCAGACTTTGGTTTTGCAAGATTGTCTGAAGACCCTGGTGCAACTCATATTTCGACACAAGTTAAAGGAACAGCCGGATATATGGATCCCGAGTATTTGAGAACTTATCAACTTACAGAAAAAAGTGATGTTTATTCCTTTGGTGTATTGCTTGTCGAAATGATGACAGGAAGACATCCAATTGAACCGAAGAAAAAAATTGACGAGAGAGTTACAATCAGATGGGCAATGAAGACGCTAAAGAAAGGAGAAGCTGTGTTTGCCATGGATCCAAGACTGAGAAGAAATCCTGCCTCAATCAAGGCAATGCAGAAGGTTTTCAAGCTAGCTTTTCGATGCCTTGTGCCTTCCATACATTCGAGGCCACCTATGAAGAATTGTGCAGAGGTTCTGTGGGCCATCCGTAAAGATTATAAAGATGAAAGCACTCCTCTTCCTACCTTACCTTCTCATCAATCTGAAAATTTTCCTCAAAGAGAAAGGAATAAGCATTTGTTAGGTATTGAAGATGAAGACAGCTACAAATTTACGTCTGCACCTAATCATATTCATTCGTGA 1380 0.3754 MKKSASTKLQYQSSERKKNGNFQDSKEIESTKKHNPKTNSALKSFKSAFRKFALIFIGKRKTASELIGSGDRKNTSKPRLVVSSSTDLSSGSTNKNSSNWKFSYSYASSSTKSEQLGVGNFTFDEIYKSTAKFSPDNQIGEGGFGTVYRGKLNDGTIVAVKRAKKEALPSHLYEFKNEIYTLSKIEHLNLVRLYGYLEHGDEKLIVVEYVANGNLREHLDGIRGNGLEIGERLDIAIDVAHAITYLHMYTDNPIIHRDIKASNILISDNLRAKVADFGFARLSEDPGATHISTQVKGTAGYMDPEYLRTYQLTEKSDVYSFGVLLVEMMTGRHPIEPKKKIDERVTIRWAMKTLKKGEAVFAMDPRLRRNPASIKAMQKVFKLAFRCLVPSIHSRPPMKNCAEVLWAIRKDYKDESTPLPTLPSHQSENFPQRERNKHLLGIEDEDSYKFTSAPNHIHS 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03617 459 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 54 428 IPR044652 GO:0004672
Trre10g03617 459 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 210 418 - -
Trre10g03617 459 MobiDBLite consensus disorder prediction 417 436 - -
Trre10g03617 459 MobiDBLite consensus disorder prediction 68 95 - -
Trre10g03617 459 MobiDBLite consensus disorder prediction 1 18 - -
Trre10g03617 459 Pfam Protein tyrosine and serine/threonine kinase 136 405 IPR001245 GO:0004672|GO:0006468
Trre10g03617 459 ProSiteProfiles Protein kinase domain profile. 133 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03617 459 ProSitePatterns Serine/Threonine protein kinases active-site signature. 254 266 IPR008271 GO:0004672|GO:0006468
Trre10g03617 459 MobiDBLite consensus disorder prediction 67 95 - -
Trre10g03617 459 SUPERFAMILY Protein kinase-like (PK-like) 113 409 IPR011009 -
Trre10g03617 459 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 1 97 209 - -
Trre10g03617 459 Gene3D Phosphorylase Kinase; domain 1 93 209 - -
Trre10g03617 459 CDD STKc_IRAK 139 405 - -
Trre10g03617 459 ProSitePatterns Protein kinases ATP-binding region signature. 139 165 IPR017441 GO:0005524
Trre10g03617 459 SMART serkin_6 133 407 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03617 459 MobiDBLite consensus disorder prediction 1 39 - -
Trre10g03617 459 Gene3D Transferase(Phosphotransferase) domain 1 210 420 - -
Trre10g03617 459 MobiDBLite consensus disorder prediction 19 36 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03617 Trre-Chr10 45778588 45781429 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03617 105 398 Receptor kinase-like Gene Family AT1G79620 42.574 2.01e-67 231
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IV Trre10g03617 PK_Tyr_Ser-Thr 1.5e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03617 - - lja:Lj2g3v2222900.1 658.292