Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03613 ATGTGTTCTTTATGTGATTTTTGCGGAGACCAGAGGTCCGTGGTGTACTGCCGCTCTGATGCTGCTTCCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAACTCACTTTCTAAGCGTCATTCAAGAACACTTGTATGTGAGAGGTGTAATTCACAACCTGCATATGTGAGGTGTGTTGATGAGAAAGTTTCACTTTGTCAGAATTGTGATTGGTCGGCTCATGGTACCGATCCATCTTCTTCAACTCACAAGAGACAATCAATCAATTGCTACTCTGGCTGTCCTTCAGCTTCCGAGCTTTCTTCAATATGGCCCTTTTTCTCGGACATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTCGGTTTGATGAGCATTAATGAGAACAGCGACAATAAACCTCTTCTTCCAGAAAGCAAGAATGTGTCTGGTTCTACTCAATTCGCCGATCTTCCCAACAACGATAAACCAAGGCCCGGCACATCTTCAATACCCGAGTCTAGTACAAAACCTCATATTATTGACCAGGCGCCTGAACCTTTCGATGAATGTATGCCTAAGTTACAATGTTCCAGTAGAAAGGCTCCTGCACTTTGTGAAGATGATAATTTGTATGATGATTTCAACATAGACGATATGGATCTTGAACTTGAGAACTATAAGGAAATTTTTGCTTTTGCTCTCAATCACTCGGAAGAGTATTTTGAAAAGGGTAGTATTGATAGCTTATTTGAGAGAAAAGACATGTCTGCTAGTGCTGTTGCTGCTGAGGGGCCATCAGCTCGGTTTGCCAGTTCAATCCAACCAGCATACAGCAATGCAGCATCAGCAGATTCAATATTAAGTACTAAAACTGAACCAGTTCTTTATTATACGGAAAGTCAATCCCAATCAAACATTTCATTTTCCAGCGCTACAAAAGATGCTAGTCCTGGTGACAATCTAGAGTGTGGTGCTTCCTCAATGCTTCTCATGGGGGAGCCTCCCTGGTGTCCTCCTTGCCCTGTGACTTCTATTCAATCTACTAATCGCAGCAACGCTGTTTTGCGTTATAAGGAAAAGAAAAAGAATCGGAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCTAGGGCTGATGTGAGAAAACGCGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACATTCGACTATGACCCTTTGAGCGAAACCAGAAGCTGCTGA 1212 0.4299 MCSLCDFCGDQRSVVYCRSDAASLCLSCDRNVHSANSLSKRHSRTLVCERCNSQPAYVRCVDEKVSLCQNCDWSAHGTDPSSSTHKRQSINCYSGCPSASELSSIWPFFSDIPSMGEACEQELGLMSINENSDNKPLLPESKNVSGSTQFADLPNNDKPRPGTSSIPESSTKPHIIDQAPEPFDECMPKLQCSSRKAPALCEDDNLYDDFNIDDMDLELENYKEIFAFALNHSEEYFEKGSIDSLFERKDMSASAVAAEGPSARFASSIQPAYSNAASADSILSTKTEPVLYYTESQSQSNISFSSATKDASPGDNLECGASSMLLMGEPPWCPPCPVTSIQSTNRSNAVLRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETFDYDPLSETRSC 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03613 403 Pfam CCT motif 346 388 IPR010402 GO:0005515
Trre10g03613 403 MobiDBLite consensus disorder prediction 130 177 - -
Trre10g03613 403 MobiDBLite consensus disorder prediction 130 172 - -
Trre10g03613 403 CDD Bbox1_BBX-like 47 90 - -
Trre10g03613 403 Pfam B-box zinc finger 46 90 IPR000315 GO:0008270
Trre10g03613 403 ProSiteProfiles CCT domain profile. 346 388 IPR010402 GO:0005515
Trre10g03613 403 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Trre10g03613 403 SMART bboxneu5 3 47 IPR000315 GO:0008270
Trre10g03613 403 SMART bboxneu5 48 90 IPR000315 GO:0008270
Trre10g03613 403 CDD Bbox1_BBX-like 4 47 - -
Trre10g03613 403 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre10g03613 403 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 2 391 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03613 Trre-Chr10 45744757 45748046 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03613 1 402 C2C2-CO-like Transcription Factor Family AT3G07650 52.732 1.87e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre10g03613 zf-B_box 1.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03613 - - tpra:123922680 713.761