Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03610 ATGGCAGAGGGAGAGAGGGTGGTGGAACCAGAACAAGAACAGGAACAACAAGAATCAGAACAAGAAACAAAGGAAACAACAACAACAACAACAATGTTGAAACACAATCAGACAATGCAGTTATTATCAGAAAAACTAACAAATGGAAACCTTAACTCAAAGATTGAAGCTGCAAGAGAAATCAGAAGAATGATTCGAAAATCATCAAAAACACGCTCTAAACTTGCTGATACTGGTGTCATTCAACCTCTTATCTTCATGCTTTCTTCTTCTAACTTTGATGCTCGTCATTCCTCTCTTCTTGCTCTCCTCAATCTTGCTGTTCGCAATGAAAGAAACAAGGTCCAAATAGTGACAGCTGGTGCAGTGCCTCCTCTGGTGGAGCTTCTCAAGATACAAAGTAACGGTATACGAGAATTGGCTACAGCCGCAGTCTTGACACTCTCATCTGCTGCAACCAACCAGCCGATTATTGCTTCTTCTGGAGCTGCTCCTCTCCTTGTTCAGATTCTGAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAACCCTCCATAATCTCTCCACCGGCATTGAGAACTCCATTGAACTTCTTGATGCTAGTGCTGTTTCCCCTCTTATCAACCTGCTTAAAGACTGTAAGAAGTATTCAAAGTTTGCAGAAAAAGCTACATCACTACTTGAAATCCTTTCCAACTCTGAAGAGGGACGAATCGCAATCTCGCTTGCAGACGGTGGAATTTTGACTCTAGTAGAGACAGTTGAAGACGGATCACTTGTCAGCACAGAGCATGCTGTTGGAGCACTGTTATCATTATGTCTAAGCTGCCGGGATAAATATCGGGAACTAATTCTTAAAGAAGGAGCAATTCCGGGTCTGTTACGGCTAACAGTAGAGGGCACAACCGAAGCTCAAGATAGAGCTCGCACGCTTCTGGATTTGCTCAGAGATTCTCCTCAAGAAAAAAAACTAGACTCCTCAGTTTTGGAAAAAATTGTTTTCGACATCGCTGAACGGCTAGATAGAGTAGATAAAACTGCTGAAACTTCGAAATGA 1062 0.4228 MAEGERVVEPEQEQEQQESEQETKETTTTTTMLKHNQTMQLLSEKLTNGNLNSKIEAAREIRRMIRKSSKTRSKLADTGVIQPLIFMLSSSNFDARHSSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKIQSNGIRELATAAVLTLSSAATNQPIIASSGAAPLLVQILKSGSVQGKVDAVTTLHNLSTGIENSIELLDASAVSPLINLLKDCKKYSKFAEKATSLLEILSNSEEGRIAISLADGGILTLVETVEDGSLVSTEHAVGALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTTEAQDRARTLLDLLRDSPQEKKLDSSVLEKIVFDIAERLDRVDKTAETSK 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03610 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 79 121 IPR000225 GO:0005515
Trre10g03610 353 SMART arm_5 192 234 IPR000225 GO:0005515
Trre10g03610 353 SMART arm_5 235 276 IPR000225 GO:0005515
Trre10g03610 353 SMART arm_5 68 108 IPR000225 GO:0005515
Trre10g03610 353 SMART arm_5 151 191 IPR000225 GO:0005515
Trre10g03610 353 SMART arm_5 109 150 IPR000225 GO:0005515
Trre10g03610 353 Pfam Armadillo/beta-catenin-like repeat 110 148 IPR000225 GO:0005515
Trre10g03610 353 Gene3D - 161 327 IPR011989 -
Trre10g03610 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 203 247 IPR000225 GO:0005515
Trre10g03610 353 PANTHER U BOX DOMAIN-CONTAINING 38 320 - -
Trre10g03610 353 MobiDBLite consensus disorder prediction 1 22 - -
Trre10g03610 353 MobiDBLite consensus disorder prediction 1 32 - -
Trre10g03610 353 Gene3D - 36 160 IPR011989 -
Trre10g03610 353 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 121 163 IPR000225 GO:0005515
Trre10g03610 353 FunFam U-box domain-containing protein 4 14 353 - -
Trre10g03610 353 SUPERFAMILY ARM repeat 36 326 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03610 Trre-Chr10 45702469 45707386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03610 26 319 U-box Gene Family AT3G54790 37.627 2.63e-38 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03610 K08332 - gmx:100782472 478.789