Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03604 ATGGGTGCCGTCGGCGAGTGTTTACCTCCGCCGCATGCGGAGGAGATGGCGGTGCTGTCTCTTAACAAGCTGCCGTTAGGTTTCCGGTTTCGTCCTACTGATGAGGAAGTCATCGATTACTATCTTCGACAGAAGATCAATGGAAACGGTGATGAAGTTTGGGTTATTCGTGAAGTTGATGTTTGTAAATGGGAGCCTTGGGATTTACCTGATTTGTCAGTGGTAAGAAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGAAAGTATCCAAATGGAAGTAGGTTGAACCGAGCAACAACTCATGGGTATTGGAAGGCAACAGGCAAGGATCGGTCGATTAAGTCTGGCTCCACCTTGATTGGAATGAAGAAGACTCTTGTTTTCTATGCCGGTCGTGCTCCGAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTATAGGCCTACCTTGAAGGAGCTCGATGGTACCAACCCTGGACAGAACCCATATGTCATTTGTCGCTTGTTTAAGAAGCTAGATGAGAGTCTCGAAAGTTCAAACTGTGGTGAAGTGGAGCAGACTGCTTCAAATCCTACGTCTGCAGATTACTCTCCAGAAGATATACAGTCTGAGCTAAATATGGTTCCTGTATCTTCCTCACCAGCCACAGAAGATGATAGGCATCTAGCAGCTATCCCTGAGAATTCTGAGGAGGCAATATCCAACGTTATAACCCCAGCTGATTGCTATAGCGATGCATGCAATGCTTCTGATGCACAATGTCAAGTTGTTGAAGTACCAGCTGCAGAGGATGATCAACTGTTGAATTTGGACATATTTGATGACCCACAATTTGAGCCATTTGATGATAAATTATTCTCCCCGATCCACGCACATTTTCCACAAGAGTTTAATTATCAAGCCAACAACGAATTCGAATTTCAGTATGGTACAAATGAAACAGATATTTCAGAGTTTTTCAACTCGGCTGTTAATTGGGACGAGTTCTCCTATGGGCCGTCTAACTCATGCTTCCTTAGTCGTAAGGACAACAGTTCGTGCAGTGACTCAGATGCAGAAATGGCCAAAGCGACGATGCATCTGCAAGCAGATTTTGGAAATAGTGATGAAGGATTGTTCCAGAACAACTCCCAGATGTCCTTTTCAACTGATTTTAATATCGGCCAAACGCCCGCTACAGTCGATGAATATGAGCAAATAAGGACTATGACAGCACGAGGTTACACTGGAATAATGCCAAGGACTCAACAAGGACAGAGTGAACAGCCAATTATGAACCAAGTCTTGCAAGCACGAGGTAGTGCACAAGGAAGTATACGGTCGGGAGGATTTGTTACACATTCCCTTGCTTCTGAGGAGACGACAAAAGATGAAAGTTATGCACCTGAATATGAGCAATCAAGAGATACTGTTGTCCCCAGTGGCACTGGAATCAGGGTAAGGACTCGACAAGTAAGAAACGAACAGCCAAACATGAACCCAGTGATGCAAGCACAGGGTAGTGCACCGAGAAGACTACGATTGGGAGGATTTGTTACGCATTCCAATGTTTCCGAGGAAACAACAAAAGATGAGAGTTCTGCACCAGAAAACCCGAACTCAGAAACCATAATTCCGACGGTATTGGGCAGAAGGGTCCGCTACACATCAAAGAGATCCTCCAATCGTTCCATGTGGTTTTCTGTTCTTGCAGTTTCTGCTACTGTACTGGTCTCAGTTGTATTGCTTGTTAATATTTGGGGATATACTTAG 1761 0.448 MGAVGECLPPPHAEEMAVLSLNKLPLGFRFRPTDEEVIDYYLRQKINGNGDEVWVIREVDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGSRLNRATTHGYWKATGKDRSIKSGSTLIGMKKTLVFYAGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVICRLFKKLDESLESSNCGEVEQTASNPTSADYSPEDIQSELNMVPVSSSPATEDDRHLAAIPENSEEAISNVITPADCYSDACNASDAQCQVVEVPAAEDDQLLNLDIFDDPQFEPFDDKLFSPIHAHFPQEFNYQANNEFEFQYGTNETDISEFFNSAVNWDEFSYGPSNSCFLSRKDNSSCSDSDAEMAKATMHLQADFGNSDEGLFQNNSQMSFSTDFNIGQTPATVDEYEQIRTMTARGYTGIMPRTQQGQSEQPIMNQVLQARGSAQGSIRSGGFVTHSLASEETTKDESYAPEYEQSRDTVVPSGTGIRVRTRQVRNEQPNMNPVMQAQGSAPRRLRLGGFVTHSNVSEETTKDESSAPENPNSETIIPTVLGRRVRYTSKRSSNRSMWFSVLAVSATVLVSVVLLVNIWGYT 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03604 586 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 286 - -
Trre10g03604 586 SUPERFAMILY NAC domain 16 174 IPR036093 GO:0003677|GO:0006355
Trre10g03604 586 MobiDBLite consensus disorder prediction 452 480 - -
Trre10g03604 586 MobiDBLite consensus disorder prediction 519 539 - -
Trre10g03604 586 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Trre10g03604 586 Gene3D NAC domain 33 178 IPR036093 GO:0003677|GO:0006355
Trre10g03604 586 FunFam Nac domain-containing protein 86 33 177 - -
Trre10g03604 586 ProSiteProfiles NAC domain profile. 24 174 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03604 Trre-Chr10 45629636 45632752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03604 16 359 NAC Transcription Factor Family AT4G35580 47.745 5.16e-97 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g03604 NAM 9.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03604 - - psat:127118605 833.172