Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03597 ATGGGAGAAGAAGAACACCACAACCTCGTCACTTTCTCTTCACTATTCAATGGTACCCAACTCTTAAAAAATATCAAAGTTATGAACTTTTCTTGTGCCATAACAAAACCCAATTTTCCATTTTCCCAAACAGAAATGCCAATTTTAACATTTGGTCATTCTAAGTTAAGTGCTACCTTAGCTCTTCAATTGCCATGTAGTTGTGTTAGGAAGATAAGGTTGATTACAAAGCTTCAATGTTCTGTTGCTGGTAGGACATATACTTCTAGGACAGGTGATTCGCGGGGACCGAAACGGGACTCTGGCGAAATTCAAAGGAGGAAGGGAGGACCCTCGTCGTCTTATGTTGGTTACATTCGTCCTAGTTTATCTGAAATGAAGAAAGATAAAGTGGCGTTGCGTGAAAATGTTTATGAGTTCTTGCGGGGAATTGGTATTGTTCCTTATGAGCTTGATGGTCTTGAACTTCCGGTTACTGTTGATGTTATGAAGGAGCGAGTTGATTTTCTTCATAGTTTGGGGCTTACGATTGAAGATATTAACAACTATCCTCTTGTTCTTGGTTGTAGCGTTAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTGACACAGTTTTTGCAGAGATACCCGCAAGTGCTTCATGCTAGTGTGGTTGTGGATCTTGAACCGGTGGTCAAGTATCTTCAAGGGATGGATATAAAGCTCATTGATATTCCTCGTGTTCTTGAGAGGTATCCTGAACTGTTGGGATTCAAACTTGAGGGTACCATGAGCACATCAGTTGCTTATTTGGTTGGAATCGGTGTTAATAGAAGAGAACTCGGAGGTATCTTAACTAGATACCCGGAGATTTTGGGGATGCGGGTTGGTAGAATCATCAAGCCTTATGTGGAGTATTTGGAAAGTTTGGGTATTCCAAGGCTAGCCATCGCTAGACTGATAGAGACGCGTCCTTATATTCTTGGATTCGATCTGGACGAGAAGGTGAAGCCAAATGTCAAATCCCTTGAAGAGTTTAATGTTAGGAAAACATCGCTTGCATCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACCTAGAGCTGAAGCTTACCAATAAGAGAAATGTGCTCAATTCTGTGCTTGATTTGGATCCTGAGGATTTCGGCTTAATTGTTGAGAAGATGCCGCAGGTAGTCAGCCTCAGTAGTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGCGGGTTTTCCATGGATCAAATGAGGAAGATGATTGTTGGATGCCCTCAACTACTTGCTTTAAACATTGATATTATGAAACTTAGCTTTGATTACTTCCAAAGTGCGATGGAAAGGTCTTTGGAAGACTTGGTTGAATTCCCAGCATTCTTCACTTATGGTTTGGAGTCAACGATAAAACCTCGGAATAACATGGTTACCAAGAAAGGATTAAAGTGTTCTCTGGCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGATACTATTGACATGGAAGAGATGGAAATGGAACCGTCATTTGACATGAATTCACTGATGCGACCAAGGAATGATGAATCAGATTCTGATTACGAAGACAGTGATGATGAAGATGACAATGAATAA 1662 0.4043 MGEEEHHNLVTFSSLFNGTQLLKNIKVMNFSCAITKPNFPFSQTEMPILTFGHSKLSATLALQLPCSCVRKIRLITKLQCSVAGRTYTSRTGDSRGPKRDSGEIQRRKGGPSSSYVGYIRPSLSEMKKDKVALRENVYEFLRGIGIVPYELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLQRYPQVLHASVVVDLEPVVKYLQGMDIKLIDIPRVLERYPELLGFKLEGTMSTSVAYLVGIGVNRRELGGILTRYPEILGMRVGRIIKPYVEYLESLGIPRLAIARLIETRPYILGFDLDEKVKPNVKSLEEFNVRKTSLASIIAQYPDIIGTDLELKLTNKRNVLNSVLDLDPEDFGLIVEKMPQVVSLSSTPMLKHVDFLKDCGFSMDQMRKMIVGCPQLLALNIDIMKLSFDYFQSAMERSLEDLVEFPAFFTYGLESTIKPRNNMVTKKGLKCSLAWMLNCSNEKFEQRMDYDTIDMEEMEMEPSFDMNSLMRPRNDESDSDYEDSDDEDDNE 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03597 553 FunFam Transcription termination factor MTERF4, chloroplastic 301 515 - -
Trre10g03597 553 Gene3D Transcription termination factor 3, mitochondrial 225 303 IPR038538 -
Trre10g03597 553 Gene3D Transcription termination factor 3, mitochondrial 132 224 IPR038538 -
Trre10g03597 553 Gene3D Transcription termination factor 3, mitochondrial 304 516 IPR038538 -
Trre10g03597 553 SMART mt_12 461 492 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 394 424 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 285 316 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 213 244 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 177 208 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 357 389 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 249 280 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 429 460 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 SMART mt_12 321 352 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 MobiDBLite consensus disorder prediction 523 553 - -
Trre10g03597 553 PANTHER CGI-12 PROTEIN-RELATED 198 316 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 FunFam Transcription termination factor mterf4, chloroplastic 163 300 - -
Trre10g03597 553 Pfam mTERF 199 507 IPR003690 GO:0003690|GO:0006355
Trre10g03597 553 MobiDBLite consensus disorder prediction 87 114 - -
Trre10g03597 553 MobiDBLite consensus disorder prediction 92 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03597 Trre-Chr10 45606524 45609388 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre10g03597 mTERF 3.3e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03597 K15032 - gmx:100785223 805.823