Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03570 ATGCATCATTTTTTGATTGCTAGATTCACTCATAGGACCATTCATCACTCTACTGTTTTATGCCACAATGCTTTTCCTTTTTTCTTCAATTCTCGTTATTTCTCTCTTTCTAACACAAATCACAATCAGCAAGATCACTCCTTTAAGCTATCAACCATCGTTAACTCATCTGGGTTGTCACCTGAATCTGTCCTTAAACTCTCCGAAAGAAACACCCTTTTGCCTAAACTCAAATTTTTGCAATCCATTGGGGTTTCAATCACAGATTTCCCCAAAATCATAAATGGGAATATTTGCTATTTAACAAGTTTGGAGAAAAACCTTATACCTCGGTATCAGATTATTCGGAGTCTTGTTCGCGATGATAAAGAGGTAGTTTCAGCTTTGAAGCGTTTGTCTTGGAACTTTTACAGTGATTCCATGGTAACTGATTCTGTTCCAAACATTGAGGTTTTGAGGAAGCTTGGTGTTCCTCAAAGTTCGATTTCACTTTTGGTATCCAATTTTCCCAATGTTGCATTTACCAAGCATTTTAGGTTTGTTGAGGCTGTTAATTTTGTCAAGGAAATGGGGTTCGATCCATTGAAGTCGAATTTTGTTTTGGCGGTTCAAGTAATTGCAAAGATGGACAAAGAGATTTGGGAGTCAAAATTGAAGATTTTTGAGAGGTGGGGTTGGTCGAGAGATATCTGTCTTTTGGCATTCCAAAAGCATCCTCAATTTATGTCGACCTCAGAAAAAAAGATTATGAAAGTAATGAGTTTCTTGGTGAAGGATGTTGCTCTAACACCAGAAGACATTGCTGGAATCCCTTGGCTTCTGAACCGCAACTTGGAGAAAACACTTGTCCCTAGATGTGCAGTTGTTAAGATTTTGAAGTCAAGGGGTTTCATAAAGAGTGGTTTGCGCATAAGTAGCTTTATTGTCGTAACTGAGAAAACATTTTTGGAGAAATATGTTACCCCATTTGAGAAAGATTTGCCAATCGTGTTGGATGCATATAAAGGTCAGAAGTCAGATTGA 1023 0.3773 MHHFLIARFTHRTIHHSTVLCHNAFPFFFNSRYFSLSNTNHNQQDHSFKLSTIVNSSGLSPESVLKLSERNTLLPKLKFLQSIGVSITDFPKIINGNICYLTSLEKNLIPRYQIIRSLVRDDKEVVSALKRLSWNFYSDSMVTDSVPNIEVLRKLGVPQSSISLLVSNFPNVAFTKHFRFVEAVNFVKEMGFDPLKSNFVLAVQVIAKMDKEIWESKLKIFERWGWSRDICLLAFQKHPQFMSTSEKKIMKVMSFLVKDVALTPEDIAGIPWLLNRNLEKTLVPRCAVVKILKSRGFIKSGLRISSFIVVTEKTFLEKYVTPFEKDLPIVLDAYKGQKSD 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03570 340 Pfam mTERF 208 316 IPR003690 GO:0003690|GO:0006355
Trre10g03570 340 Pfam mTERF 64 251 IPR003690 GO:0003690|GO:0006355
Trre10g03570 340 SMART mt_12 62 86 IPR003690 GO:0003690|GO:0006355
Trre10g03570 340 SMART mt_12 163 193 IPR003690 GO:0003690|GO:0006355
Trre10g03570 340 SMART mt_12 232 263 IPR003690 GO:0003690|GO:0006355
Trre10g03570 340 SMART mt_12 264 298 IPR003690 GO:0003690|GO:0006355
Trre10g03570 340 PANTHER CGI-12 PROTEIN-RELATED 63 322 IPR003690 GO:0003690|GO:0006355
Trre10g03570 340 FunFam Mitochondrial transcription termination factor-like 104 327 - -
Trre10g03570 340 Gene3D Transcription termination factor 3, mitochondrial 99 326 IPR038538 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03570 Trre-Chr10 45372851 45373967 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre10g03570 mTERF 1.1e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03570 K15032 - gmx:106799612 369.777