Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03555 ATGCTCTATTACCGTTTATGTTCCTGCCTGAGGAGACGGCGGGAAGCAACCCTGCAGCAGCCACCACCGCCTCAGGAACCGGAAGATTTTGTGGTTGACGCGAAGAAATTTACATTTGAAGAGTTGGCGTGCGCAACCGATGGTTTTGCTAGCCATAACCTCCTCGGACAAGGGGGTTTTGGCTTTGTCCACAGAGGAATTCTTGATGGAGGTTGCATGATTGCGGTAAAGCAACTGAAAGATAGAGGTGATCAAGGGGAGAGAGAATTTCAGGCAGAGGTGGAGATTATCAACCGTGTTTATCATAAACACATTGTTTCTTTTATTGGATATTGCAATGATGATCATCACAGACTCCTTGTTTTTGAGTTTGTTGATAATAAGACATTGCATTTCCACTTACATGGAGCAGGATCGGCATTGGACTGGCAAACAAGGTTCAAAATTGCCGTAGGATGCGCAAAAGGATTAGAGTATCTTCATGAGCACTGTGATCCTATGATCATTCATCGTGATATTAAAGCAGAAAATATCCTTCTCGATTCGAATTTTGAAGCAAAGATTGCAGATTTTGGTCTTGCAAAGAGGGTTCATGATGCATATACTCATGTTTCTACCCGAGTGAAGGGAACTTTTGGGTATCTGTGTCCAGAGTATGCATTTTGTGGACAACTTTGCACAAAGTCTGATGTATACTCTTTTGGAGTCATTCTCCTCGAATTGTTAACAACACGGCGACCGGTTTATCATGATCAGAGTATCAATTTGGTTCAGTGGGCTACTCCTTTTCTCGTGCGTGCTATAGATGGTGATTTGGATTCTTTTATTGATCCAAGGCTTCTTAACAATCATGACCCTGTCCAGATTATTCGTATGGTGACATGCGCTGCAGCTTGCACGCGTCGCATGCCTAAGAGTCGACCAAGGATGTCTCAGGTTGTGGGCATGCTCGAAGGAAATCATCCACTGAATGAAATCAAAGAAGAAATCAAACAAGAAATTATACACAGAGAGAGCTCCTCCGTGTATGTTTCAGCTGAAGGAGAGTTCAAATAA 1056 0.4309 MLYYRLCSCLRRRREATLQQPPPPQEPEDFVVDAKKFTFEELACATDGFASHNLLGQGGFGFVHRGILDGGCMIAVKQLKDRGDQGEREFQAEVEIINRVYHKHIVSFIGYCNDDHHRLLVFEFVDNKTLHFHLHGAGSALDWQTRFKIAVGCAKGLEYLHEHCDPMIIHRDIKAENILLDSNFEAKIADFGLAKRVHDAYTHVSTRVKGTFGYLCPEYAFCGQLCTKSDVYSFGVILLELLTTRRPVYHDQSINLVQWATPFLVRAIDGDLDSFIDPRLLNNHDPVQIIRMVTCAAACTRRMPKSRPRMSQVVGMLEGNHPLNEIKEEIKQEIIHRESSSVYVSAEGEFK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03555 351 ProSiteProfiles Protein kinase domain profile. 49 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03555 351 Gene3D Phosphorylase Kinase; domain 1 22 124 - -
Trre10g03555 351 Pfam Protein kinase domain 51 255 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03555 351 FunFam Somatic embryogenesis receptor kinase 1 22 124 - -
Trre10g03555 351 SUPERFAMILY Protein kinase-like (PK-like) 24 318 IPR011009 -
Trre10g03555 351 CDD STKc_IRAK 55 319 - -
Trre10g03555 351 SMART serkin_6 49 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03555 351 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 7 331 IPR047117 -
Trre10g03555 351 ProSitePatterns Serine/Threonine protein kinases active-site signature. 168 180 IPR008271 GO:0004672|GO:0006468
Trre10g03555 351 ProSitePatterns Protein kinases ATP-binding region signature. 55 77 IPR017441 GO:0005524
Trre10g03555 351 FunFam proline-rich receptor-like protein kinase PERK8 125 345 - -
Trre10g03555 351 Gene3D Transferase(Phosphotransferase) domain 1 125 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03555 Trre-Chr10 45276035 45279852 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03555 37 318 Trihelix Transcription Factor Family AT5G38560 55.709 2.66e-110 335
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre10g03555 Pkinase 4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03555 - - sind:105162089 370.548