Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03554 ATGGGATTATTCGGATTAAGCACCATATTTGTCCTCATGCTCTATTACCGTTTATGTTCCTGCCTGAGGAGACGGCGGGAAGCAACCCTGCAGCAGCCACCACCGCCTCAGGAACCGGAAGATTTTGTGGTTGACGCGAAGAAATTTACATTTGAAGAGTTGGCGTGCGCAACCGATGGTTTTGCTAGCCATAACCTCCTCGGACAAGGGGGTTTTGGCTTTGTCCACAGAGGAATTCTTGATGGAGGTTGCATGATTGCGGTAAAGCAACTGAAAGATAGAGGTGATCAAGGGGAGAGAGAATTTCAGGCAGAGGTGGAGATTATCAACCGTGTTTATCATAAACACATTGTTTCTTTTATTGGATATTGCAATGATGATCATCACAGACTCCTTGTTTTTGAGTTTGTTGATAATAAGACATTGCATTTCCACTTACATGGAGCAGGATCGGCATTGGACTGGCAAACAAGGTTCAAAATTGCCGTAGGATGCGCAAAAGGATTAGAGTATCTTCATGAGCACTGTGATCCTATGATCATTCATCGTGATATTAAAGCAGAAAATATCCTTCTCGATTCGAATTTTGAAGCAAAGATTGCAGATTTTGGTCTTGCAAAGAGGGTTCATGATGCATATACTCATGTTTCTACCCGAGTGAAGGGAACTTTTGGGTATCTGTGTCCAGAGTATGCATTTTGTGGACAACTTTGCACAAAGTCTGATGTATACTCTTTTGGAGTCATTCTCCTCGAATTGTTAACAACACGGCGACCGGTTTATCATGATCAGAGTATCAATTTGGTTCAGTGGGCTACTCCTTTTCTCGTGCGTGCTATAGATGGTGATTTGGATTCTTTTATTGATCCAAGGCTTCTTAACAATCATGACCCTGTCCAGATTATTCGTATGGTGACATGCGCTGCAGCTTGCACGCGTCGCATGCCTAAGAGTCGACCAAGGATGTCTCAGGTTGTGGGCATGCTCGAAGGAAATCATCCACTGAATGAAATCAAAGAAGAAATCAAACAAGAAATTATACACAGAGAGAGCTCCTCCGTGTATGTTTCAGCTGAAGGAGAGTTCAAATAA 1092 0.4295 MGLFGLSTIFVLMLYYRLCSCLRRRREATLQQPPPPQEPEDFVVDAKKFTFEELACATDGFASHNLLGQGGFGFVHRGILDGGCMIAVKQLKDRGDQGEREFQAEVEIINRVYHKHIVSFIGYCNDDHHRLLVFEFVDNKTLHFHLHGAGSALDWQTRFKIAVGCAKGLEYLHEHCDPMIIHRDIKAENILLDSNFEAKIADFGLAKRVHDAYTHVSTRVKGTFGYLCPEYAFCGQLCTKSDVYSFGVILLELLTTRRPVYHDQSINLVQWATPFLVRAIDGDLDSFIDPRLLNNHDPVQIIRMVTCAAACTRRMPKSRPRMSQVVGMLEGNHPLNEIKEEIKQEIIHRESSSVYVSAEGEFK 363
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03554 363 ProSiteProfiles Protein kinase domain profile. 61 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03554 363 SUPERFAMILY Protein kinase-like (PK-like) 36 330 IPR011009 -
Trre10g03554 363 FunFam Somatic embryogenesis receptor kinase 1 34 136 - -
Trre10g03554 363 Gene3D Transferase(Phosphotransferase) domain 1 137 355 - -
Trre10g03554 363 ProSitePatterns Protein kinases ATP-binding region signature. 67 89 IPR017441 GO:0005524
Trre10g03554 363 FunFam proline-rich receptor-like protein kinase PERK8 137 356 - -
Trre10g03554 363 CDD STKc_IRAK 67 331 - -
Trre10g03554 363 SMART serkin_6 61 336 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03554 363 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 10 343 IPR047117 -
Trre10g03554 363 ProSitePatterns Serine/Threonine protein kinases active-site signature. 180 192 IPR008271 GO:0004672|GO:0006468
Trre10g03554 363 Gene3D Phosphorylase Kinase; domain 1 34 136 - -
Trre10g03554 363 Pfam Protein kinase domain 63 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre10g03554 Trre-Chr10 45276035 45279888 Dispersed/Tandem
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03554 49 330 Trihelix Transcription Factor Family AT5G38560 55.709 5.07e-110 334
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Trre10g03554 Pkinase 4.5e-47 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03554 - - sind:105162089 370.548