Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03548 ATGGAAACTTTGGATAGTAATTCAGACCAATATGCTAATGTTTCTTCTAATTCGCCATCGTTATCGTCATCTTCGTCGTTTGGTGGGGTTAATGGTGATGATAATAATGGTAGTGTGACTTGGTATGGAATGAGGTTACCTTCTGTTAATCCCTTTTTGTCACCACTTTCGTTTTTATTGGATTATTCTGGAATTCTACGATCGAACAATGATTCTGAGGCTATGATTGTGAACAATGGAGTTTCTGGTTCGGAAATACGGTCTCGGGTTGATTCCGCTGCTGCTGTTGGTGAGAGCAGTGCAGGGGAAGTTGCAATTAGGATAATTGGAGCTGGAGAGCATATTCAGAATCAGGTTGGAGAAGTGGGTTATGATGATTGTGGTGAGGATCTGGTTGGTGAGAGAAGTGGAATTCCTGCATTGGATGATGGTGATGCCGCGGGACGTGGTGGAATTGAGACTAGTGAGGGGGTTCCTCTTGTGTCTTCGTCTTCATCGTCGTCGTTGGCTGGTAGTGGACAGGTTGATGGTGATACTTCTGGGAATGGAACAGAAAATAACAGCAGGGATTCGTCTTCTTATCAGAGATATGATATTCAGCTGGTTGCTAAGTGGATTGAGCAGATTCTTCCTTTTTCGCTCTTGTTATTGGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAACAGACAGCTTTGAAGGGAGATAGGAAAGTCTCTTTGCTTGCTGGTATCTCTATTGCTTTCATTCTTCACGTGATATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGTCATGTTACCTCCAAGTCCAACACCTTTCTGGCATGCAATATTCACAATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTACTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTGTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCTTGAATAGGGAATACGGCAGTCTCTTTTCATCACTGACCACAGGATTGTATTTAACTTTCAAGCTAACATCCGTTGTTGAGAAGGTCCAGTGCTTCCTTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTATGGGGTCTATGCCACAGCAGAGCAGGTAACAGCTGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATTCCCCCATCTTGCTACGTTGTAAACACATTTTCTGCGAAGATTGTGTATCTGAATGGTTTGAAAGAGAAAGGACTTGCCCTCTATGTAGAGCATTGGTTAAAGCAGCTGATCTTCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTTCCAGTTGTTTTAA 1464 0.4208 METLDSNSDQYANVSSNSPSLSSSSSFGGVNGDDNNGSVTWYGMRLPSVNPFLSPLSFLLDYSGILRSNNDSEAMIVNNGVSGSEIRSRVDSAAAVGESSAGEVAIRIIGAGEHIQNQVGEVGYDDCGEDLVGERSGIPALDDGDAAGRGGIETSEGVPLVSSSSSSSLAGSGQVDGDTSGNGTENNSRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGISIAFILHVICIYWWYRNDDILYPLVMLPPSPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFLSALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03548 487 ProSiteProfiles Zinc finger RING-type profile. 426 464 IPR001841 -
Trre10g03548 487 SMART ring_2 426 463 IPR001841 -
Trre10g03548 487 Pfam Zinc finger, C3HC4 type (RING finger) 424 468 - -
Trre10g03548 487 SUPERFAMILY RING/U-box 419 468 - -
Trre10g03548 487 MobiDBLite consensus disorder prediction 157 191 - -
Trre10g03548 487 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 402 474 IPR013083 -
Trre10g03548 487 MobiDBLite consensus disorder prediction 138 191 - -
Trre10g03548 487 MobiDBLite consensus disorder prediction 1 29 - -
Trre10g03548 487 ProSitePatterns Zinc finger RING-type signature. 441 450 IPR017907 -
Trre10g03548 487 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 25 487 IPR044235 GO:0061630|GO:1904294
Trre10g03548 487 CDD RING-HC_RNFT1-like 424 464 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03548 Trre-Chr10 45189770 45196566 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03548 46 487 C3H Transcription Factor Family AT5G01960 61.659 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03548 - K22379 nnu:104612968 585.489