Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03541 ATGCAGCACCACCGCAGAAAAAAGAAACCCCTAGCACACAGTTTGCCACAAAAATTCAAGATGCAGCAAATCTTTGTTAAGACCCTCATTGACAAGACCATTACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGACCAAGATTCAAGATAAGGAAGGGATCCCACCAGACCAGCAGCGTCTGATTTTTGCTGGAAAGCGGTTGGAGGATGGGCGCACCCTTGCTGATTACAACATTCAAAAGGAGTCCACCCTCCATTTGGTTCTCCATCTCCGTGGTGGGATGCAAATATTTGTCAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAAAGCTCTGATACCATTGACAATGTCAAGGCTAAGATTCAAGACAAAGAAGGTATTCCACCAGACCAGCAAAGGCTGATTTTTGCTGGAAAACAGCTTGAAGATGGCAGGACATTAGCTGATTACAACATCCAGAAGGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCAGACACGATTGACAATGTAAAGACTAAGATTCAAGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGTTGATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGCATGCAAATATTTGTGAAGACATTGACTGGTAAAACCATTACTTTGGAGGTGGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAGATACAGGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAGACTCTTACCGGAAAGACTATTACCTTGGAGGTAGAGAGCTCAGACACTATTGACAATGTGAAGACCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATAACATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAAATCTTTGTGAAGACGCTGACAGGAAAGACCATTACCTTGGAGGTAGAAAGTTCAGACACAATTGATAATGTGAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCCGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTCCGTGGTGGATTTTGA 1437 0.4495 MQHHRRKKKPLAHSLPQKFKMQQIFVKTLIDKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKRLEDGRTLADYNIQKESTLHLVLHLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03541 478 ProSiteProfiles Ubiquitin domain profile. 402 477 IPR000626 GO:0005515
Trre10g03541 478 ProSiteProfiles Ubiquitin domain profile. 22 97 IPR000626 GO:0005515
Trre10g03541 478 PRINTS Ubiquitin signature 129 149 IPR019956 -
Trre10g03541 478 PRINTS Ubiquitin signature 150 171 IPR019956 -
Trre10g03541 478 PRINTS Ubiquitin signature 108 128 IPR019956 -
Trre10g03541 478 CDD Ubl_ubiquitin 326 401 - -
Trre10g03541 478 ProSitePatterns Ubiquitin domain signature. 124 149 IPR019954 -
Trre10g03541 478 ProSiteProfiles Ubiquitin domain profile. 326 401 IPR000626 GO:0005515
Trre10g03541 478 Pfam Ubiquitin family 24 95 IPR000626 GO:0005515
Trre10g03541 478 Pfam Ubiquitin family 100 171 IPR000626 GO:0005515
Trre10g03541 478 Pfam Ubiquitin family 252 323 IPR000626 GO:0005515
Trre10g03541 478 Pfam Ubiquitin family 328 399 IPR000626 GO:0005515
Trre10g03541 478 Pfam Ubiquitin family 404 475 IPR000626 GO:0005515
Trre10g03541 478 Pfam Ubiquitin family 176 247 IPR000626 GO:0005515
Trre10g03541 478 ProSiteProfiles Ubiquitin domain profile. 174 249 IPR000626 GO:0005515
Trre10g03541 478 SUPERFAMILY Ubiquitin-like 173 249 IPR029071 -
Trre10g03541 478 CDD Ubl_ubiquitin 174 249 - -
Trre10g03541 478 FunFam Polyubiquitin 3 402 477 - -
Trre10g03541 478 SUPERFAMILY Ubiquitin-like 96 173 IPR029071 -
Trre10g03541 478 SUPERFAMILY Ubiquitin-like 324 401 IPR029071 -
Trre10g03541 478 ProSiteProfiles Ubiquitin domain profile. 98 173 IPR000626 GO:0005515
Trre10g03541 478 Gene3D - 17 97 - -
Trre10g03541 478 Gene3D - 98 173 - -
Trre10g03541 478 Gene3D - 250 325 - -
Trre10g03541 478 Gene3D - 402 478 - -
Trre10g03541 478 Gene3D - 174 249 - -
Trre10g03541 478 Gene3D - 326 401 - -
Trre10g03541 478 FunFam Polyubiquitin 3 99 173 - -
Trre10g03541 478 ProSitePatterns Ubiquitin domain signature. 352 377 IPR019954 -
Trre10g03541 478 SUPERFAMILY Ubiquitin-like 401 477 IPR029071 -
Trre10g03541 478 ProSiteProfiles Ubiquitin domain profile. 250 325 IPR000626 GO:0005515
Trre10g03541 478 ProSitePatterns Ubiquitin domain signature. 48 73 IPR019954 -
Trre10g03541 478 ProSitePatterns Ubiquitin domain signature. 428 453 IPR019954 -
Trre10g03541 478 FunFam Polyubiquitin 3 326 401 - -
Trre10g03541 478 PANTHER UBIQUITIN 98 175 - -
Trre10g03541 478 SMART ubq_7 250 321 IPR000626 GO:0005515
Trre10g03541 478 SMART ubq_7 174 245 IPR000626 GO:0005515
Trre10g03541 478 SMART ubq_7 326 397 IPR000626 GO:0005515
Trre10g03541 478 SMART ubq_7 402 473 IPR000626 GO:0005515
Trre10g03541 478 SMART ubq_7 22 93 IPR000626 GO:0005515
Trre10g03541 478 SMART ubq_7 98 169 IPR000626 GO:0005515
Trre10g03541 478 CDD Ubl_ubiquitin 402 477 - -
Trre10g03541 478 SUPERFAMILY Ubiquitin-like 249 325 IPR029071 -
Trre10g03541 478 ProSitePatterns Ubiquitin domain signature. 200 225 IPR019954 -
Trre10g03541 478 FunFam Polyubiquitin 3 250 325 - -
Trre10g03541 478 FunFam Ubiquitin-60S ribosomal protein 22 98 - -
Trre10g03541 478 CDD Ubl_ubiquitin 250 325 - -
Trre10g03541 478 ProSitePatterns Ubiquitin domain signature. 276 301 IPR019954 -
Trre10g03541 478 FunFam Polyubiquitin 3 174 249 - -
Trre10g03541 478 SUPERFAMILY Ubiquitin-like 9 97 IPR029071 -
Trre10g03541 478 CDD Ubl_ubiquitin 98 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03541 Trre-Chr10 45154242 45156834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03541 23 98 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 92.105 1.27e-41 143
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03541 - K08770 oeu:111397323 870.152