Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03535 ATGAAGTGTTTCCATTTCTCAAACGGAGGATCAGAAAAACAACAACGAGTAATAGGAGAAGACGAAGAAACTTCAGCATCAAGTTCAAGAGGTTCACGTGTCTCATGGGCGCGTTCACTAAGTTTAATGGACACGCGCCGTTCCGAATACGATTCCGATTCACGTGACTTCTCCGATACTCTTGGTTTCCATGAGTTTCTCTCTCAACGACGAGCCAATCACCTTAACATCTTCTCTTTCTCTGATCTTAAAATCGCAACTCGTGGTTTCAATAGAGCTCTTTTAATTGGTGAAGGTGGTTTCGGTTCTGTTTATAGAGGAACCCTAAATCATCATTCTCATCGTTCTCAAATTGATGTTGCGATTAAACAGTTGAATCGTAATGGTCATCAGGGGCATAAGGAGTGGATTAATGAAGTGAATTTGTTAGGGGTAATTAAGCATCCAAATTTGGTGAGGTTAGTGGGTTATTGTGCTGAAGATGATGAAAGAGGGATTCAGAGGCTTTTGGTGTATGAATTTATGTCTAATAAGAGTTTGGAAGATCATCTTTTGGTTCGTGTTCCTTCTTCGGTTCTTCCTTGGATTACTAGATTAAGAATTGCACAAGATGCGGCTCGTGGCTTGGCTTACCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAAACATCCAACATCTTACTGGATGAGGACTTCAATGCAAAGCTTTCTGATTTTGGACTCGCTAGGCAAGGACCCTCAGAAGGATTTGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGATATGCTGCACCAGAGTATGTTCATACCGGTAAGCTGACTGCTAAGAGTGATGTGTGGAGCTTTGGCGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCCGTAGAAAGAAACCTACCAAGAAACGAACAAAAGCTTCTGGATTGGGTAAGACCTTATGTATCTGATTCTAAGAAGTTCCATCATATTATCGATCCCCGACTTGAGGGACAGGATTGCACCAAATCAGCTCATAAACTTGCAATCCTAGCAAACAAGTGTCTGATGAAGCAGCCAAAATCTCGTCCAAAAATGAGCGAGGTGGTTGAGATTCTCGACAGCATTATCAACGAGACTGTTCCTGTGGATGAATGCATTTCTGAAGTTGTTACTGAAACAGGAGAAGGAAATGTAGTTAATTTATCTGTAGAGGTCACTGAACCTGAACCAGCTAAACAGGGGAATAATTATCTGAAGAAGGTTTTTGAATTCAGAGACAAGGTGAGCTTAAAAAATAAATCCATTGGAAGGTTTGATTGGAAAAATTGGGCGCCTGGGCTTGTAAGAACTTGGTGA 1353 0.4109 MKCFHFSNGGSEKQQRVIGEDEETSASSSRGSRVSWARSLSLMDTRRSEYDSDSRDFSDTLGFHEFLSQRRANHLNIFSFSDLKIATRGFNRALLIGEGGFGSVYRGTLNHHSHRSQIDVAIKQLNRNGHQGHKEWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYEFMSNKSLEDHLLVRVPSSVLPWITRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGFGYVSTAVVGTIGYAAPEYVHTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLDWVRPYVSDSKKFHHIIDPRLEGQDCTKSAHKLAILANKCLMKQPKSRPKMSEVVEILDSIINETVPVDECISEVVTETGEGNVVNLSVEVTEPEPAKQGNNYLKKVFEFRDKVSLKNKSIGRFDWKNWAPGLVRTW 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03535 450 ProSitePatterns Protein kinases ATP-binding region signature. 96 123 IPR017441 GO:0005524
Trre10g03535 450 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 175 383 - -
Trre10g03535 450 PANTHER OS01G0588500 PROTEIN-RELATED 39 373 - -
Trre10g03535 450 Gene3D Phosphorylase Kinase; domain 1 64 174 - -
Trre10g03535 450 Pfam Protein tyrosine and serine/threonine kinase 96 371 IPR001245 GO:0004672|GO:0006468
Trre10g03535 450 Gene3D Transferase(Phosphotransferase) domain 1 175 389 - -
Trre10g03535 450 ProSiteProfiles Protein kinase domain profile. 90 375 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre10g03535 450 CDD STKc_IRAK 96 374 - -
Trre10g03535 450 SUPERFAMILY Protein kinase-like (PK-like) 72 371 IPR011009 -
Trre10g03535 450 FunFam Serine/threonine-protein kinase BIK1 62 174 - -
Trre10g03535 450 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03535 Trre-Chr10 45114684 45117154 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03535 78 371 Glycoside Hydrolase AT3G07070 51.525 1.99e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre10g03535 PK_Tyr_Ser-Thr 3.5e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03535 - - gmx:100811825 710.679