Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03519 ATGGCCAGGCGAAAAAGTAAACCGCATCGATCAGGTGGGATACTAGTCGAAGCCAATGCTACCGCTGAAGCAGAACCAGATAAACATAATGCTGTAGAAGTAGGAGAAGAAGAAAAGTGTGATTTTGATAAACCTTATTTTGTTGAGGTTGACCGGTCATGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTTTAAGGGATTTAAATTTAAGAGAAGGTTTTAATGGTTTTGACCTGTCTGAGGATTTTTATCAGGATCCCCAATTTTCGTTAAGATTTCGGTTGTGTAATGTAAGTAATATTCGTGGTCGAATCAAACTTGGCCATTGGCCTGTGTTACCTTATACTGATATTCATCTAGAGTTTGTTAAAAGAGCTACAGTTGACAATACCGAAACATGCACAGTGTTGTTATCTGGTATTTTTGATGGACCCGATGAAGGTGTTTCTGGTCTTGTTCACTTGACGAGTTTGAAATTTGTTACATTGAGGGCTGTTATTGGGATTAAGCTTTCTGACGACATTCCTTCCCTTAGGATTAGGGTTGAGGTACTAAAGAGTGCCTTCGATGCATGCGAGTCACTTCTTGAGGTTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGTTACGACCAGAAATAATGACTTGGTTACGACCAGAAATAATGACTTCAGAAGTTAAGTATGGGTTTAGTAGCTACATGGACATGGACATGGAAGTTGATTCTCAGGAAGAAATGGCAGACGACGTTGGCTATGCAGGGAAGTGCTCGAGGTTTGATCCTGCTGGTTTTTATGAAGCCATTAGGCCTTCAAGAGCAGAGCCAATGCTTGAAGATGACATACCTGATTTACTTCCTGAACTTCGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAAAACGGGAAAAAGTAATGGAAGAAAGTCAGAGTGAGAGTGAAAGAAATCTGTTTCATTCTCCACTATGTGTGCCAGTGGATTTTCTGGACACAAGGGCAAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCCTTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGGTTAGGTAAAACTGTAGAATTGCTTGCTTGCATCTTTGCTCACCGTAAATCAGCATATGGAAGTGACATACTAATGGATTCAGTTCCCCAAGTCGATGGCGACGAAAAAGTCACTATAAAAAGACTAAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGAAAGTCTAAAATATCAAGGACTATGGGTTCAGTGCGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAGTCACTGAAATCAAAACAAGGATTGGAAAGCAAGGCATATAAAACTACCATAGCTGTGAGAAATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAAGCTACTGAAAGTCCTATTGCCTCTGGTGCCACTCTCATTGTTTGCCCAGCTCCTATTTTGCCTCAGTGGCATGATGAAATTATACGTCATACACGTCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTTCGTGAAACATCTTTCTCCAATAAACCTCTGATGGATGTCAGTGATCTTGCGAGTGCAGACATTGTACTAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATATAGGCGACAGACACCTTTTAAGATTTCATAAAAGGTACCCGGTTATCCCAACTCTTCTTACCAGAATATCATGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTAGAGAGTACTGTTGCTACTGCTGCTACTGAAATGGCTCTAAGACTCCATTGCAAGCATCGTTGGTGCGTTTCAGGGACCCCAATTCAGCGAAAGCTTGATGATCTATATGGACTTCTAAGATTCATTAAAACCAGTCCCTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGATCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACTTGTTGCTGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAGTTTGTGTTAGAGATTCCCATGACGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTATGAGTGGTTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTATTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGGCTGCGTTCCATACAGCAGTCACCTATGACAATAGAAGAAGTACTAATGGTCCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAGGTCCGTTGTTGCTCTGAATGCGCTTGCAGCAATATTTATAATACAAAAAGATTATTATCAAGCTGCTTTGCTGTACAATGAAGCTCTTACTTTGGCTGAAGAGCATTCTGAAGATTTCCGCCTGGATCCTTTGTTAAATATACACATTCATCATAATCTTGCTGAAATATTCCCCCTGGCTCAGAATTTTGCTTTGATCTTGCCATCCAAAACAAAACAATTTTCTGGAACTTCTGGAGTTAATACAACTAAAAAGCATTTTATTGTAAAGGTTGATCATGATCAAGTGAAGAGGCATAAAATAAGTAGCTTTGATGACGCAAATTCAACAGTGGCTTCTGCAGAACCATCAAATGTTGCATCTAGCCTTTCAGAAAATGACTTAAATGATAGGGAATTTGATGATTTGTCGGCAAGTTCCGTCAAATATCTGATAGCTGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTAGCTGCAGCTCAGCAGGAGTTTCAAAGTTCTTATACGCAGGTTCATAAAGCATATCATGACGCCATAACAAATCAAACTACATTTTGGTGGTTAGAAGCACTTCATTATGCTGAGCAGAACAAGGATTTCTCAACCGAGTTGATTAGAAAGATTGAAGAAGCCCTCTCAGGAAATTCAAACAGTTCAAAATCGCCACGAATACCTGCTCGTTTTCGGAGCATACACTCTCTGAAGTATCAAATTCAAACCGATTTGGACCAATTAGAAGCCTCTAGGAAAGTGTTATTAGATCGTCTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGATGAAGATATTGAGCGCGCTGGTAAATGTCGAAACTGCGTACCTAATTGTGATGGCCCCCCATGCGTTCTGTGTGAACTAGATGAGTTGTTTCAGGCCTATGAAGCTAGACTCTTCGTTCTCAGGAACGAACGTGGTGGGATAATATCATCTGCTGAGGAGGCAGTAGATTTTCAAAAGCAAAAATTTGCATTGAATCAATTCCTCTCAAAGCTATCACAATCTAATCACAGTTCATCAGTGTCTGATCCTGCACATGAAGAGTCCAGAAAAAGGAATGTTGGCCAGAAAGTTGTGACTTCAAAATTGCCATCTATGTTGGAGGTTCTTCTTGGAGTTATAATGAACTATTGCAAGACTCAATTTGGAAAGGACAGTGTCTCAGCAGCCACCAAGCATTTACATATTTTTGAGGGAATGCGAAAGGAGTATGGCTATGCAAGGTCTTTGGCACTAGCTCAAGCTCAATATTTGCGTGCCCATGATGAATTAAAAATGGCGATTTCTCGTTTACGCCTAAAGGCAAATGAAGATGATGAATCTCTTGATGCTTTAGGTGAAAATGAATTAATTGCAGCTAGCTCAAAACATTCCCAGGAGAAGTTTATGTCATTGGCCTTGTTGTCACAGATAAAAGGAAAACTACGGTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATCGGAAAGTCCAGATAACTCTTTATGCACTCAAGATACAAATGCTTCTACGGAAGAAAAGGATGAACTCATACCTAAAACTTATGAGGAAACATGCCCAATTTGCCAAGAAAAGCTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCATGTTACTTGCTGTAAATGTTTATTTGCTATGTCTGAGCAAAGACTTCAACATAGCAAGACTCATAATTGGGTGATGTGCCCTACATGTAGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACAAAATGAATCTCCCAATTCTTCAATGCTGCATACAATTGATGGCTGTGAAAAACATGAAGCATCTATTACTGTTAAAGGCTCATATGGAACCAAGATTGAAGCAATCACAAGAAGAATCTTGTGGATAAAGGCTACAGATCATAAATCAAAAGTTCTGGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCGTTTGCCGCCAATAACATCACCTTCATCCGGATGAAGGGAGGCAGGAAAGCACACACTTCCATCAGTCAATTTAGAGGAAAACCGAATGGCACAAAAGGATGTGAGGGATCAGAACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAACATGTGGTCCTTGTAGAGCCATTACTCAATCCAGCTGCCGAAGCACAAGCAATCAGTCGTGTACATCGTATTGGCCAAAAAAATAAGACCGTCATTCATCGTTTCTTAGTAAAAGACACAGTTGAAGAGAGCATATATAAATTGAACAGACGCAGAAGCAAAAGTAACCATTCATTCATTAGTGGCAACACAAAAAATCAAGATCAACCTATTTTGACCCTTAAAGATGTAGAATCCTTGTTGGCAACAGCACCATTAACGGCGCCAGAAATCGATGAAACTCCTACTACAAATACAAACTTGAGAGACTTGCCACCATCAGTTGCTGCAGCTATAGCAGCTGAGAGAAGACATAATGAGCAAAGAACATGA 5034 0.4017 MARRKSKPHRSGGILVEANATAEAEPDKHNAVEVGEEEKCDFDKPYFVEVDRSCWLSDEHLDISEVVLRDLNLREGFNGFDLSEDFYQDPQFSLRFRLCNVSNIRGRIKLGHWPVLPYTDIHLEFVKRATVDNTETCTVLLSGIFDGPDEGVSGLVHLTSLKFVTLRAVIGIKLSDDIPSLRIRVEVLKSAFDACESLLEVSRQLWKKSMMNVMSWLRPEIMTWLRPEIMTSEVKYGFSSYMDMDMEVDSQEEMADDVGYAGKCSRFDPAGFYEAIRPSRAEPMLEDDIPDLLPELRPYQRRAAFWMVKREKVMEESQSESERNLFHSPLCVPVDFLDTRAKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRKSAYGSDILMDSVPQVDGDEKVTIKRLKRERVECICGAVSESLKYQGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGLESKAYKTTIAVRNGEYVCQMCSELIQATESPIASGATLIVCPAPILPQWHDEIIRHTRPGALKTCIYEGVRETSFSNKPLMDVSDLASADIVLTTYDVLKEDLSHDSDRHIGDRHLLRFHKRYPVIPTLLTRISWWRICLDEAQMVESTVATAATEMALRLHCKHRWCVSGTPIQRKLDDLYGLLRFIKTSPFNIYRWWSEVIRDPYEKGDMGAMEFTHRIFKQIMWRSSKQLVADELDLPSQEECLSWLTLSPVEEHFYQRQHEVCVRDSHDVIESLRNDILNRKVPDSVSMSGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSIQQSPMTIEEVLMVLISKTKIEGEEALRRSVVALNALAAIFIIQKDYYQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEIFPLAQNFALILPSKTKQFSGTSGVNTTKKHFIVKVDHDQVKRHKISSFDDANSTVASAEPSNVASSLSENDLNDREFDDLSASSVKYLIAECEDSKQKYLSVFSSKLAAAQQEFQSSYTQVHKAYHDAITNQTTFWWLEALHYAEQNKDFSTELIRKIEEALSGNSNSSKSPRIPARFRSIHSLKYQIQTDLDQLEASRKVLLDRLLEIDQTMEKPKDEDIERAGKCRNCVPNCDGPPCVLCELDELFQAYEARLFVLRNERGGIISSAEEAVDFQKQKFALNQFLSKLSQSNHSSSVSDPAHEESRKRNVGQKVVTSKLPSMLEVLLGVIMNYCKTQFGKDSVSAATKHLHIFEGMRKEYGYARSLALAQAQYLRAHDELKMAISRLRLKANEDDESLDALGENELIAASSKHSQEKFMSLALLSQIKGKLRYLKGLVQSKQKLPSESPDNSLCTQDTNASTEEKDELIPKTYEETCPICQEKLGHQRMVFQCGHVTCCKCLFAMSEQRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQNESPNSSMLHTIDGCEKHEASITVKGSYGTKIEAITRRILWIKATDHKSKVLVFSSWNDVLDVLEHAFAANNITFIRMKGGRKAHTSISQFRGKPNGTKGCEGSEPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTVIHRFLVKDTVEESIYKLNRRRSKSNHSFISGNTKNQDQPILTLKDVESLLATAPLTAPEIDETPTTNTNLRDLPPSVAAAIAAERRHNEQRT 1677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03519 1677 MobiDBLite consensus disorder prediction 1327 1350 - -
Trre10g03519 1677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 601 1618 IPR027417 -
Trre10g03519 1677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 407 488 IPR013083 -
Trre10g03519 1677 ProSitePatterns Zinc finger PHD-type signature. 422 488 IPR019786 -
Trre10g03519 1677 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1676 - -
Trre10g03519 1677 SMART helicmild6 1487 1579 IPR001650 -
Trre10g03519 1677 ProSiteProfiles Zinc finger RING-type profile. 1362 1410 IPR001841 -
Trre10g03519 1677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 280 695 IPR027417 -
Trre10g03519 1677 Pfam SNF2-related domain 299 792 IPR000330 GO:0005524|GO:0140658
Trre10g03519 1677 Pfam Helicase conserved C-terminal domain 1456 1579 IPR001650 -
Trre10g03519 1677 Gene3D - 359 400 IPR038718 -
Trre10g03519 1677 Gene3D - 489 717 IPR038718 -
Trre10g03519 1677 SMART PHD_3 421 489 IPR001965 -
Trre10g03519 1677 SMART ring_2 1362 1409 IPR001841 -
Trre10g03519 1677 SUPERFAMILY FYVE/PHD zinc finger 418 490 IPR011011 -
Trre10g03519 1677 MobiDBLite consensus disorder prediction 1 27 - -
Trre10g03519 1677 SUPERFAMILY RING/U-box 1361 1414 - -
Trre10g03519 1677 CDD PHD_TCF19_like 423 488 - -
Trre10g03519 1677 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1459 1626 IPR001650 -
Trre10g03519 1677 SMART ultradead3 292 665 IPR014001 -
Trre10g03519 1677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1346 1430 IPR013083 -
Trre10g03519 1677 Pfam PHD-finger 422 490 IPR019787 -
Trre10g03519 1677 CDD SF2_C_SNF 1453 1590 - -
Trre10g03519 1677 Gene3D - 1432 1649 IPR027417 -
Trre10g03519 1677 CDD DEXQc_SHPRH 296 696 - -
Trre10g03519 1677 MobiDBLite consensus disorder prediction 1327 1344 - -
Trre10g03519 1677 MobiDBLite consensus disorder prediction 1176 1196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03519 Trre-Chr10 45012360 45025313 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03519 229 790 RAD5 or RAD16-like Gene Family AT5G22750 26.232 8.82e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre10g03519 SNF2_N 1.9e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03519 K15710 - gmx:100776659 2690.22