Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03517 ATGGAACCACATCTGAATGCAGCAGCTTCGTCCATGCTGAGAAACAGCAGAAACATACCTTGTCTTCCTCAACCATTGCTAGCTTTTACTACCAGAATGCTATCTTCTTCACCACCATCTTCTTCTCCTGTAACTACTTCATCTGAAACAAGATTAGGCTATTCTTCTATAAACCCTAAACCTTCATTCAAGAACCTTTCTCTATTCTCAAACAATCATTCTCTTCAAAGCATGACAACGGTTTCCAAATGTTTCTCTCAGTCTGATTCAATACCGGGTTCGGAATCCGATTCAGTAGATTCTCTTGTTGTGGTTTCGTTTTATAAGTTTGCGGATTTCCCTGACCATGCTGTTTTTCGTGATCCATTGAAGCAACTGTGTCAACAATTGCTTGTTTCAGGCGGTATCATTCTTGCGCCTGAAGGAATTAATGGAAGCCTATGTGGCACGAGGGAGTCGGTGGAGAAAGTTCTTGCATTTATTCAGAGTGATGATCGTCTGAAAGGTCTAAGACGTATTGAATCTCCTGTCAGTCCTGAGGAGGAGGCCATCCATCAGGACTATCATGGACACAGTGCCAGTTCTCCTCTTGCTGCTGGGGAGGATGTACCTTTCCGATGGGACCATGTGAGAGTCAAGTTGAAGAAAGAGATTGTCACTCTTGGGATGCCTACGATATCACCTATGGAAAAGGTTGGAAAATATATTAGCCCAAAGGAATGGAATTCTTTGATTAGTGATCCGGATACAGTAGTAATTGATGTGCGGAATAACTATGAAACGAGAATAGGAAAATTTAAAGGAGCAGTTGATCCATGTACGACGTCATTTCGTGAATTCCCATCTTGGGTGGAGGAACGTTTTGAGCTTGCCAGAACAGATGCTGAGCATCCAAAAGTAGATGTAAACCAGTCAGACCAAAATGCTGAAAAAGAAACAGAGAATCCGAAACATTTGCCACGTGTTGCAATGTATTGTACTGGGGGTATTCGATGTGAGAAAGCTTCAAGTTTACTTCTCAGCAAAGGTTTTAAAGAGGTTTATCACCTGGAAGGTGGAATTCTGAAATATCTTGAGGAGGTTCCAGAGAGACAAAGTCTATGGGAAGGAGAGTGCTTTGTTTTCGATAAGCGAGTCTCCGTCGAGCATGGTTTGGCACCAGGAAATTTCAAGCTATGTTATGGTTGTAAGCAGCCTGTGAGTGATGCAGACATGGAATCCCCAGAATATGAATATGGAGTCTCCTGTCCTTACTGTTTTGCACAGAAATCAGAAGAAGAGAAGGAGAGGGCTCGAGCTCGGCAAAAACAATTTGAGAGATGGGGGATCATAGGTGGTCCTGACAAGGGCCGTCGGCCGACACAGGAGTCAGACGGTGCTAACAGCAATCAAAATCAACTTTCAAAGTCTGTTTAA 1416 0.4315 MEPHLNAAASSMLRNSRNIPCLPQPLLAFTTRMLSSSPPSSSPVTTSSETRLGYSSINPKPSFKNLSLFSNNHSLQSMTTVSKCFSQSDSIPGSESDSVDSLVVVSFYKFADFPDHAVFRDPLKQLCQQLLVSGGIILAPEGINGSLCGTRESVEKVLAFIQSDDRLKGLRRIESPVSPEEEAIHQDYHGHSASSPLAAGEDVPFRWDHVRVKLKKEIVTLGMPTISPMEKVGKYISPKEWNSLISDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFELARTDAEHPKVDVNQSDQNAEKETENPKHLPRVAMYCTGGIRCEKASSLLLSKGFKEVYHLEGGILKYLEEVPERQSLWEGECFVFDKRVSVEHGLAPGNFKLCYGCKQPVSDADMESPEYEYGVSCPYCFAQKSEEEKERARARQKQFERWGIIGGPDKGRRPTQESDGANSNQNQLSKSV 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03517 471 ProSiteProfiles Rhodanese domain profile. 246 366 IPR001763 -
Trre10g03517 471 Gene3D - 92 219 - -
Trre10g03517 471 CDD RHOD_YceA 233 359 - -
Trre10g03517 471 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 215 392 IPR036873 -
Trre10g03517 471 Hamap tRNA uridine(34) hydroxylase [trhO]. 100 403 IPR020936 -
Trre10g03517 471 Pfam Rhodanese-like domain 237 359 IPR001763 -
Trre10g03517 471 SMART rhod_4 236 363 IPR001763 -
Trre10g03517 471 Pfam UPF0176 acylphosphatase like domain 103 218 IPR040503 -
Trre10g03517 471 MobiDBLite consensus disorder prediction 456 471 - -
Trre10g03517 471 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 97 452 IPR020936 -
Trre10g03517 471 Gene3D - 220 400 IPR036873 -
Trre10g03517 471 MobiDBLite consensus disorder prediction 295 314 - -
Trre10g03517 471 MobiDBLite consensus disorder prediction 430 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03517 Trre-Chr10 45004532 45008659 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03517 76 465 Sulfurtransferasese or Rhodanese AT2G40760 73.165 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03517 - - psat:127118628 759.985