Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03516 ATGGATAATAATATCTCTAAAAGTGTGAAAAAGAAGGTGGTAATCAATGAACTTGTTAAGGGACAAGAAGCTGCAACCAAACTCAAGATTCTTCTTCAGAATCAGAAGAATCATCCTTTTGGTGATGGCTCTCTCTCATCCTATAAACTTGCTGCAAATGTTCTCAGATCTTTCACTGAAGCTCTTTCTATTATCTCTCAACCAACTGGTTGTGATGATTTTCTAAATCTTCTCAATTATGGCGAAAATGGGTTGTCGGTTGTCGTCTCCGGTAATAATCCACCGTGTGATGGGATTAAGAAGAGTTCATTGCCTGCTAAGGGTGGTAGAGGGTGCTACAAAAGAAGGAAGAATGAAGAGAGATGGAGCATAGTTTCCCCGACTATTGATGATAATTATTCATGGAGAAAGTATGGACAGAAGGAAATAATGAATTCTGAATTTCCTAGGAGTTACTTGAGGTGCACATTTAAGAATGATCAAGGTTGCTTAGCAACAAAACAAGTGCAAAAGACACAAGACAATCCTGATATGTATCAAATTACTTACATTGGCATTCACACATGCAACACAATTAATAATGAGGTAGTTCTTGTGAATTCTGATCCTGATGAAGTGAAAGTTCTAACACCAAGCATAACTATAAAACAAGAATATCCCAAACAAGAACCGAGCAAAGTTATGGAATCTGATGATATATTTCAAAGTTTAGCATTGGAATTTGGTGACATTGATTTCTACTTTGATGAAAATTAA 756 0.3611 MDNNISKSVKKKVVINELVKGQEAATKLKILLQNQKNHPFGDGSLSSYKLAANVLRSFTEALSIISQPTGCDDFLNLLNYGENGLSVVVSGNNPPCDGIKKSSLPAKGGRGCYKRRKNEERWSIVSPTIDDNYSWRKYGQKEIMNSEFPRSYLRCTFKNDQGCLATKQVQKTQDNPDMYQITYIGIHTCNTINNEVVLVNSDPDEVKVLTPSITIKQEYPKQEPSKVMESDDIFQSLALEFGDIDFYFDEN 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03516 251 SUPERFAMILY WRKY DNA-binding domain 126 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03516 251 ProSiteProfiles WRKY domain profile. 129 192 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03516 251 Pfam WRKY DNA -binding domain 130 190 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03516 251 Gene3D WRKY domain 118 191 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03516 251 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 18 207 IPR044810 GO:0003700
Trre10g03516 251 SMART WRKY_cls 129 191 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03516 Trre-Chr10 44986689 44990142 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03516 1 191 WRKY Transcription Factor Family AT3G56400 43.000 3.99e-42 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g03516 WRKY 3.5e-24 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03516 - - mtr:11424834 274.633