Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03512 ATGGAAGAAGTCGTGAATTCTATCATGCGTGCTTTTGAATTGGCCAAAGAACATGAACTTGAACTACCAAACATTTCCAACAACCTTGAAATGCTATTTTCATCCATTGATAAGGTTGAAAAAGCATTTAGTTCTGCAAAAGAGAAATTAATGATGATTATGTCATCACAAAATGACATGACAAAAGTTTCTAATTCTTTTGCTGAAATTCTGTCTCATGATGTTTTCATGCAAAACAATCATGATCATGCTCAAATGGGTGGAAGTGGAGGAACTTCAATGCATGCACATTCAATGGATCATTTGCTTCTAATGCAACAATCTTTTGAGATGCTAAGGTCTAGGGGAACTTTGATGATCGGTGAAATGGGTGGTAGGGATGTGGAAGGTTTAGAGAAATCAAAAGGGTCAGAAGGAGGAGAAATGCAAGGAATAGAAGAACCACCATCACGACCAAAAAAGAGCAGTAGGAAGAATGATTTGGAGAAGAGAACTCAGATGTTTCCAGCACCTCAGATTGGTAACACTGAAATGCCACCAGAAGATGGCTTCACTTGGAGAAAATATGGACAAAAAGAGATACTTGGCCGCAAGTATCCAAGGAGTTACTATAGGTGCACACACCAAAAATTATATTTGTGCCCTGCCAAGAAACAAGTACAAAGACTAGATAACAATCCTAACATAGTTGAAGTGACATATAGAGGTGAACACATTTGTCACAAATCCTTAACAGCACCATCATCATATCCACCACCACCAAACCTACTTGTTAACATTAATACTACTCAAGCTACCATTCCTCCTGAGGCGTGGCCGCCAGCGGTGAACCTCGGCCTCAGGGGTGGAAACGGTAGTGGTGGACCGTCTACTTCAAGATTCGGAGGCATTGATTATCCAGTAACCGATATGGCGGATGCAATGTTCAACTCCGGTAGTAGCAGTGGCAATAGCATGGAATCACTCTTTTATCCAAGTGAAGATAAATGGGAACCTGATGAAAAGATAAATTGA 1014 0.4034 MEEVVNSIMRAFELAKEHELELPNISNNLEMLFSSIDKVEKAFSSAKEKLMMIMSSQNDMTKVSNSFAEILSHDVFMQNNHDHAQMGGSGGTSMHAHSMDHLLLMQQSFEMLRSRGTLMIGEMGGRDVEGLEKSKGSEGGEMQGIEEPPSRPKKSSRKNDLEKRTQMFPAPQIGNTEMPPEDGFTWRKYGQKEILGRKYPRSYYRCTHQKLYLCPAKKQVQRLDNNPNIVEVTYRGEHICHKSLTAPSSYPPPPNLLVNINTTQATIPPEAWPPAVNLGLRGGNGSGGPSTSRFGGIDYPVTDMADAMFNSGSSSGNSMESLFYPSEDKWEPDEKIN 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03512 337 Gene3D WRKY domain 170 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03512 337 MobiDBLite consensus disorder prediction 310 337 - -
Trre10g03512 337 MobiDBLite consensus disorder prediction 126 140 - -
Trre10g03512 337 SMART WRKY_cls 180 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03512 337 PANTHER WRKY TRANSCRIPTION FACTOR 30-RELATED-RELATED 72 245 IPR044810 GO:0003700
Trre10g03512 337 MobiDBLite consensus disorder prediction 147 164 - -
Trre10g03512 337 ProSiteProfiles WRKY domain profile. 181 238 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre10g03512 337 SUPERFAMILY WRKY DNA-binding domain 177 241 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre10g03512 337 MobiDBLite consensus disorder prediction 124 184 - -
Trre10g03512 337 Pfam WRKY DNA -binding domain 181 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03512 Trre-Chr10 44965205 44968882 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03512 1 323 WRKY Transcription Factor Family AT2G40740 35.435 6.42e-50 167
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre10g03512 WRKY 7.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03512 - - mtr:11424132 498.434