Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03508 ATGCCGAATCCCAATACAAATCAAAATCATCCACACCGCTCCAAAACTCGACCGTCCACGTCATCATCTCGACCATCCACATCATCATCCCGACAACACCAACAACAACCACCACCACCGGTTCAACCACGAGTTCCGTTACGTCAGTTACTCCGAGTAGCATCAGTAGCAAGTGGAATTCAATTCGGTTGGGCTTTACAGCTTTCACTATTAACACCATACGTTCAACAATTAGGTATCCCTCATCAATGGGCGAGTATAATCTGGTTATGTGGACCGGTTTCCGGTTTATTTGTTCAACCGTTAGTCGGTCATTTAAGTGACAAATGTTCGAGTAAATTCGGTCGCCGGAGACCGTTTATTGTCGTCGGCGCCGCTTCGATCGTTATCGCTGTTATTATAATTGGTTATGCTGCTGATATTGGTTGGTTGATTGGTGATGATGTTGAACAAAGTTATCGTCCTTTTGCTATAACTGTTTTTGTTATTGGATTTTGGATTCTTGATGTTGCTAATAATGTTACTCAAGGTCCTTGTAGAGCTTTACTTGCAGATCTCACAAGAAATGATGCTCGAAGGACACGTGTTGCAAATGCTTATTTCTCCCTGTTTATGGCCGTTGGTAACATTCTTGGCTATGCAACTGGGTCATACAGTGGCTGGTACAAGATTTTTAAATTCACACTTACCCCTGCTTGCTCTATTAGTTGTGCAAATCTCAAGTCTGCTTTCTTTCTCGACGTTGCTTTCATTGCGGTAACGACATATCTCAGCATCGCGTCAGCTCATGAAGTGCCTCTAAGTTCAAGTGGAGCAGTACATGCTGGAGAAGGAGCAGGAGAGATAGAAGAAGCTTTCATGTGGGAATTGTTTGGGACATTCAAATATTTTTCAACGCCTATATGGATAGTACTGTCTGTAACTGCTCTGACATGGATTGGGTGGTTCCCATTTATTCTCTTTGATACTGATTGGATGGGTCGGGAAATTTATGGTGGTGATCCAAATGGAGGCCTTATTTATGATAATGGCGTTAGAATGGGAGCACTTGGTTTGTTACTTAATTCAGTTGTTCTTGGAGTAACATCATTGCTTATGGAAAGGCTATGCAGGAAGCGAGGGGCTGGTTTTGTGTGGGGAATCTCAAATATATTTATGGCTCTTTGCTTTATAGCAATGTTAGTATTAACCTATGCGGCAAATAGCATTGGCTACGTAAGTAAAGGTCAACCGCCACCAACAGGCATTGTGATCGCAGCGTTAGCAATCTTTACCATTCTTGGGTTTCCACTGGCAATCACTTACAGTGTTCCATATGCCTTAATTTCCACGCATATCGAACCATTGGGACTTGGCCAAGGGTTGTCAATGGGTGTCCTAAATCTGGCAATAGTGGTCCCACAGGCTTCCTCTGAAGTCCTGCTGCATGGAGTAGTTGGAGCCGATGGTCTTTATAAATTTGCCTCTCCTTTAGTTTCCTTTCCTGCATTAAATAAATCCAAGCAGTATTGTGGTGTCCCTGGGAAGTGGACCGTGGGATCAGATATTTGGTGGAGGAAACTCTCCAGCCTTTGCCGTGGCAGCTGTTGCAGCCCTTTTCAGTGGACTCTTAGCTCTATTAGCTATTCCCCGAACTCGTACTCAAAAGCCTCGAAGTCGTGTATGAGGTTTGGTTTATGCTTGTCATTGTTTGTTCACACCTAA 1704 0.436 MPNPNTNQNHPHRSKTRPSTSSSRPSTSSSRQHQQQPPPPVQPRVPLRQLLRVASVASGIQFGWALQLSLLTPYVQQLGIPHQWASIIWLCGPVSGLFVQPLVGHLSDKCSSKFGRRRPFIVVGAASIVIAVIIIGYAADIGWLIGDDVEQSYRPFAITVFVIGFWILDVANNVTQGPCRALLADLTRNDARRTRVANAYFSLFMAVGNILGYATGSYSGWYKIFKFTLTPACSISCANLKSAFFLDVAFIAVTTYLSIASAHEVPLSSSGAVHAGEGAGEIEEAFMWELFGTFKYFSTPIWIVLSVTALTWIGWFPFILFDTDWMGREIYGGDPNGGLIYDNGVRMGALGLLLNSVVLGVTSLLMERLCRKRGAGFVWGISNIFMALCFIAMLVLTYAANSIGYVSKGQPPPTGIVIAALAIFTILGFPLAITYSVPYALISTHIEPLGLGQGLSMGVLNLAIVVPQASSEVLLHGVVGADGLYKFASPLVSFPALNKSKQYCGVPGKWTVGSDIWWRKLSSLCRGSCCSPFQWTLSSISYSPNSYSKASKSCMRFGLCLSLFVHT 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03508 567 CDD MFS_SLC45_SUC 50 468 - -
Trre10g03508 567 FunFam Sucrose transporter SUC2 48 269 - -
Trre10g03508 567 SUPERFAMILY MFS general substrate transporter 48 469 IPR036259 -
Trre10g03508 567 Gene3D MFS general substrate transporter like domains 47 494 IPR036259 -
Trre10g03508 567 PANTHER SUGAR TRANSPORTER 44 480 - -
Trre10g03508 567 MobiDBLite consensus disorder prediction 1 44 - -
Trre10g03508 567 Pfam MFS/sugar transport protein 65 213 - -
Trre10g03508 567 MobiDBLite consensus disorder prediction 1 35 - -
Trre10g03508 567 NCBIfam sucrose/proton symporter 45 469 IPR005989 GO:0005886|GO:0008515|GO:0015770
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03508 Trre-Chr10 44888951 44908104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03508 5 468 Sucrose Transporter Gene Family AT1G09960 69.247 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03508 K15378 - gmx:100820483 694.886