Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03494 ATGTCTCTACCAAGGCTAGGAATAGGTGATAATGAAGGTGAAAACAATGTTGTTACTATGTTGGAAAAAAGTGTGTGTTTGAATGGTTCAAAACGAAAAGAGTTCAACTATATGGGATTATCATCATCTAATTGTTCATCAGTGGATAGTTCAGTTCCAAAAATTCAATCTTTTTCTGATGAGACTAAAAGTAATTTGAATCTTAAAGCTACTGAGCTTAGATTGGGACTTCCTGGATCATTGTCACCCGAAAGAGATTCATCGGATCATTTTTTGAGAAGTTCAATTCAGTTTGATGAAAAGCCTCTTTTTCCTTTACACCCTCAAAAAGATGATCATCTTTTCGAATCAAAGCCGGCTATTTTAGGTAACAAAAGAGGGTTTTCTGATGCCATGAATGTTTTCTCAGAGGGGAAATTGAAGCCTAGCTCGAAAATGCTTGAGAGTGTTGTGGCGCAGAAAGTGAAAGCCGATGAAATAGTAACAGTTAAGGTTGGTCTTGAGAGGCCTCATGGTGTCGGTGAAACCAGACAAAATCTTAATGGTTCTGCAAATAATGGAAATAGCATTGCACCAGCTACCAAGGCACAGGTTATTGGTTGGCCTCCAATAAGATCATTTAGGAAAAATTCACTGACAAATGCTTCAAAAAACACCGAAGAGGTTGATGGAAAATTGGGATCGGGAAGTGCTGTTTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATTTAAGAAAAGTAGACTTGAAGAATTACACTGCTTATTCTCAATTATCTTCTGCTCTTGAGAAAATGTTCAGCTGTTTCACCATAGGTCAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACCAAGCTGAGGGATCTGCTTCATGGATCAGAATATGTTATTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTAGGTGATGTTCCTTGGGAGATGTTTATTGATACATGCAAGAGACTAAGAATCATGAAGAGTTCTGAAGCCATTGGTCTAGCCCCTAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAG 1047 0.3811 MSLPRLGIGDNEGENNVVTMLEKSVCLNGSKRKEFNYMGLSSSNCSSVDSSVPKIQSFSDETKSNLNLKATELRLGLPGSLSPERDSSDHFLRSSIQFDEKPLFPLHPQKDDHLFESKPAILGNKRGFSDAMNVFSEGKLKPSSKMLESVVAQKVKADEIVTVKVGLERPHGVGETRQNLNGSANNGNSIAPATKAQVIGWPPIRSFRKNSLTNASKNTEEVDGKLGSGSAVFVKVSMDGAPYLRKVDLKNYTAYSQLSSALEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSSEAIGLAPRAVEKSKSRN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03494 348 SUPERFAMILY CAD & PB1 domains 227 329 - -
Trre10g03494 348 ProSiteProfiles PB1 domain profile. 231 330 IPR000270 GO:0005515
Trre10g03494 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 335 IPR003311 GO:0005634|GO:0006355
Trre10g03494 348 Pfam AUX/IAA family 71 339 IPR033389 -
Trre10g03494 348 FunFam Auxin-responsive protein 227 340 - -
Trre10g03494 348 Gene3D - 227 342 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03494 Trre-Chr10 44739767 44742956 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03494 215 338 B3 DNA Binding Superfamily AT4G23980 30.645 9.49e-10 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre10g03494 AUX_IAA 4.2e-87 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03494 K14484 - gmx:100815447 488.804