Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03492 ATGGAGCATCAATCCCTCACTTCTCATCCCAATTCCACTAATTCATCCCCTAACTCTCGCGAATTGGTCGAAAACAACGATCACCGTTCACCATTCGATGAACAACCACCACCACCGCCACCACCTTCCAATTCCAACAGAGTCAAGCTAATGTGTAGCTACGGTGGAAAAATTCAACCTAGGCTACACGATCATCACTTTACGTACATCGGCGGCGACACCAAAATCCTCACCGTCGATCGTGCCGTCAAATTAACCACACTCGTCGGTAAGCTTTCAACAATGGCGAATTGTGATGTTTGCTTTAAGTATCAACTCCCTGGTGAAGATCTCGATGCTTTGATCTCCGTTTGCAACGAAGAAGATCTCGATCATATGATGATCGAGTACGATCGGTTGTGTCGCGTTTCGCCTAAACCTGCTAGGTTGAGGCTCTTCCTCTTCCCTGCACCTGTCATCATCAACAACAACAAGGACGATGAAGACGCATCTGCTGATTCTTCTGTCTCCGCTGTAATTCTCGCCGCGGTGGAGGATTCCAAATCGGAAGGACAATGGTTCATCGACGCGCTCAATTCCGCTAATGTTCCACCGTTGGAAGAATCTCCTCCACCGCCTCCGACGTTGAATCCGGATTATCTGTTTGGTTTGGATAAGCCGTATTCTGAAACTCCGACGGGGAATGAAGTGGAATTTCCGGTAACTGTTCCGGATTTTCCGGCGACGGAAACTGAATGTGGTCCCGAAACGGTTAAAGAAACTGAGATTCAGGAACTTGAGAAAATGGAGTTTGTGAATATTGAACAGGAACTGAAAGTTGACGGAGAAAACGGCGGAATTAACGGTGTTTTTGACTGTTACACTGAAGAAAACGCGGAAAAAGTGATTCCGTTAGTTACTAATGAACCACCTGTTCAGAGTCAGACTCAATCTCTGGATCAAATTCAAATCCAACCCACCGGTTCATTTCAGGTTCAGATTCCTGAACCGGTACCGGTTCAGTCAATATTTTCTCCTGTAAGGCATCATAATGTGGCTCCTGGTGGTTACTCAGTGGGGTATCCACATGAACCGGCTCCGGTTTATCTGATTCAAACATCTTCAGGATTGTATCAAGCACTGAGGCCGATAACCGGACCACACGGTCAACCGGTTTATTTCGCGTATGCGCAAATTGTGAACCAGTTTGGTTATAATGGTTCAAGGGTACCCGGTGTGGTTTCTGAGCATGGATATTCCAATGGTTCTTATGTGTCTGACAGATCAGCTTTGCCATTGTAG 1281 0.4645 MEHQSLTSHPNSTNSSPNSRELVENNDHRSPFDEQPPPPPPPSNSNRVKLMCSYGGKIQPRLHDHHFTYIGGDTKILTVDRAVKLTTLVGKLSTMANCDVCFKYQLPGEDLDALISVCNEEDLDHMMIEYDRLCRVSPKPARLRLFLFPAPVIINNNKDDEDASADSSVSAVILAAVEDSKSEGQWFIDALNSANVPPLEESPPPPPTLNPDYLFGLDKPYSETPTGNEVEFPVTVPDFPATETECGPETVKETEIQELEKMEFVNIEQELKVDGENGGINGVFDCYTEENAEKVIPLVTNEPPVQSQTQSLDQIQIQPTGSFQVQIPEPVPVQSIFSPVRHHNVAPGGYSVGYPHEPAPVYLIQTSSGLYQALRPITGPHGQPVYFAYAQIVNQFGYNGSRVPGVVSEHGYSNGSYVSDRSALPL 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03492 426 MobiDBLite consensus disorder prediction 1 21 - -
Trre10g03492 426 SUPERFAMILY CAD & PB1 domains 64 150 - -
Trre10g03492 426 MobiDBLite consensus disorder prediction 1 47 - -
Trre10g03492 426 SMART PB1_new 62 150 IPR000270 GO:0005515
Trre10g03492 426 PANTHER OS05G0427100 PROTEIN-RELATED 10 363 - -
Trre10g03492 426 Gene3D - 67 149 - -
Trre10g03492 426 Pfam PB1 domain 67 149 IPR000270 GO:0005515
Trre10g03492 426 CDD PB1_UP2 51 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03492 Trre-Chr10 44707223 44708503 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03492 46 193 MAP Kinase Kinase Kinase AT5G57610 36.486 6.17e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03492 - - tpra:123920161 731.095