Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03485 ATGGCTACCGTGGGAGTAGAAGTGAAGCACGCACACAGTGCACTGGAGGAAAATTGCTCTGCCAAACCCACCAAACCGGGTGAGGGTCTCCGCCAGTACTACTTGCAGCATATCCATGATCTACAGCTCCATCTTCGCCAAAAGACGCATAACCTCAACCGTCTCGAGGCTCAACGGAATGATCTAAATTCTAGGGTGAGGATGCTCCGAGAAGAACTGCAGCTTCTCCAGGAGCCTGGTTCATATGTTGGTGAAGTTGTCAAAGTTATGGGCAAGAGCAAAGTATTGGTCAAGGTTCATCCGGAAGGGAAATATGTTGTTGATATTGATAAAAATATTGACATAACGAAGCTTACTCCTTCGACTAGAGTTGCTCTCCGCAATGACAGTTATGTGCTTCATTTAGTTCTGCCAAGCAAAGTTGATCCGTTGGTCAATCTGATGAAAGTTGAGAAAGTTCCCGATTCTACATATGACATGATTGGTGGTTTAGACCAGCAAATCAAAGAAATGAAAGAAGTCATTGAGCTACCGATTAAACACCCTGAGCTGTTTGAAAGTCTTGGAATAGCTCAACCAAAGGGTGTCTTGCTCTACGGGCCACCTGGTACAGGAAAAACTTTGTTGGCTAGGGCAGTGGCACATCATACCGATTGCACATTCATCAGGGTGTCTGGTTCTGAATTAGTTCAGAAATACATTGGAGAAGGTTCTAGAATGGTCAGGGAACTTTTTGTTATGGCCAGGGAGCATGCTCCATCAATTATCTTCATGGACGAAATTGACAGTATTGGATCTGCTCGGATGGAATCTGGAAATGGCAATGGTGATAGTGAAGTGCAGCGCACTATGCTGGAACTTCTCAATCAGTTGGATGGATTTGAAGCTTCAAATAAAATCAAGGTATTGATGGCTACAAATCGGATTGATATCCTGGACCAAGCACTCCTAAGACCTGGACGGATTGATCGGAAGATTGAATTTCCAAACCCTAATGAAGAGTCTCGCCTGGATATTGTGAAAATCCATTCAAGAAGAATGAATTTAATGCGAGGGATTCATTTGAAGAAGATTGCTGAGAAGATGAATGGAGCATCTGGTGCCGAGCTTAAGGCTGTGTGCACGGAAGCTGGAATGTTTGCTTTGAGGGAGAGAAGGATACATGTGGCACAGGAAGATTTTGAGATGGCTGTGGCCAAGGTGATGAAAAAGGAAACAGAGAAAAATATGTCATTGAGGAAGTTGTGGAAATGA 1254 0.4394 MATVGVEVKHAHSALEENCSAKPTKPGEGLRQYYLQHIHDLQLHLRQKTHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPEGKYVVDIDKNIDITKLTPSTRVALRNDSYVLHLVLPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEMKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGNGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDIVKIHSRRMNLMRGIHLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVAQEDFEMAVAKVMKKETEKNMSLRKLWK 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03485 417 Gene3D - 335 412 - -
Trre10g03485 417 FunFam 26S protease regulatory subunit 8 44 148 - -
Trre10g03485 417 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 154 406 IPR027417 -
Trre10g03485 417 Gene3D - 149 330 IPR027417 -
Trre10g03485 417 FunFam 26S protease regulatory subunit 8 335 412 - -
Trre10g03485 417 Pfam ATPase family associated with various cellular activities (AAA) 196 329 IPR003959 GO:0005524|GO:0016887
Trre10g03485 417 CDD RecA-like_PAN_like 157 328 - -
Trre10g03485 417 SMART AAA_5 192 332 IPR003593 GO:0016887
Trre10g03485 417 FunFam 26S protease regulatory subunit 8 149 330 - -
Trre10g03485 417 Coils Coil 38 72 - -
Trre10g03485 417 PANTHER 26S PROTEASOME REGULATORY SUBUNIT 32 409 - -
Trre10g03485 417 ProSitePatterns AAA-protein family signature. 300 318 IPR003960 GO:0005524|GO:0016887
Trre10g03485 417 Pfam Proteasomal ATPase OB C-terminal domain 83 138 IPR032501 -
Trre10g03485 417 Pfam AAA+ lid domain 355 395 IPR041569 -
Trre10g03485 417 Gene3D - 43 148 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03485 Trre-Chr10 44603298 44608497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03485 139 384 Calmodulin-binding Proteins AT3G56690 41.463 1.87e-55 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03485 K03066 - jre:109011222 768.074