Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03480 ATGGCAGCCTGTCGCTTTGTCTGTTATAACAAACCAACGCGTTCCGCACCAATAGTGTTTTTCTGGTTTGTTAGGGTTTGTTTTTTGGAGATAGAAATGGGGAGAGGAAAGATCCAGATAAGGAGGATTGATAATTCGACGAGCAGACAAGTTACATTTTCAAAGCGAAGAAACGGTTTGTTGAAGAAGGCAAAAGAACTTGCGATTTTGTGTGATGCTGAAGTAGGAGTTGTAATCTTCTCTAGCACTGCAAAACTCTACGATTTCGCTAGTACAAGAAGCGTCGATGGATCTGCACACTCTAAAATAGTAAATGAAATTAAAGTAAAGTGA 333 0.3964 MAACRFVCYNKPTRSAPIVFFWFVRVCFLEIEMGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVVIFSSTAKLYDFASTRSVDGSAHSKIVNEIKVK 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03480 110 SUPERFAMILY SRF-like 33 95 IPR036879 GO:0003677|GO:0046983
Trre10g03480 110 PRINTS MADS domain signature 35 55 IPR002100 GO:0003677|GO:0046983
Trre10g03480 110 PRINTS MADS domain signature 70 91 IPR002100 GO:0003677|GO:0046983
Trre10g03480 110 PRINTS MADS domain signature 55 70 IPR002100 GO:0003677|GO:0046983
Trre10g03480 110 SMART madsneu2 33 92 IPR002100 GO:0003677|GO:0046983
Trre10g03480 110 PANTHER SERUM RESPONSE FACTOR HOMOLOG 33 94 - -
Trre10g03480 110 Gene3D - 45 108 IPR036879 GO:0003677|GO:0046983
Trre10g03480 110 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 42 89 IPR002100 GO:0003677|GO:0046983
Trre10g03480 110 CDD MADS_MEF2_like 34 92 IPR033896 GO:0000977|GO:0045944
Trre10g03480 110 ProSitePatterns MADS-box domain signature. 35 89 IPR002100 GO:0003677|GO:0046983
Trre10g03480 110 ProSiteProfiles MADS-box domain profile. 33 93 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03480 Trre-Chr10 44530186 44539641 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03480 33 95 MADS-box Gene Family AT2G14210 85.714 7.13e-33 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre10g03480 SRF-TF 8.1e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03480 K09264 - psom:113330621 115.931