Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03478 ATGTCCTCACATGCAGTGCAGTTGCATGTCAAGAAAAATCATGTGGTTATGGACAATGGTATACTACAAGTGTATTTATCAAATCCAGATGGATTTGTGACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGCTCTTAACGAAAATAATAATAGAGGGTATTGGGATGATGTTTGGAGTGAAGCAGGAAGCACCGGAACAACCGGGACATCCGAGCGGATTGTTGGAACAAGTTTTAAGGTAATAATGGAAACAGAAGAACAAGTTGAAATCTCATTTTCAAGAATTTGGGATCCATCTCTAAAGGGAAAGCAATCAGCTCTAAATATAGACAAAAGGTATGTGATGCTACGCAATTCGTCGGGATTCTACTCTTATGCTATCTTTGAGCACCTAAAGGAGTGGCCAGCTTTCAACATACCTCAAATAAGGATTGTTTATAAGCTTCGTAAAGACAAGTTTCATTACATGGCTATGGCGGATAATAGACAAAGGTTGATGCCTCTACCTGATGATCGATCACCTGAAAGAGGAGAAGAACTTATTCCTCCAGAAGCTGTTTTGCTTGTTAATCCACTGGAACCAGAATTTGCAGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAGAACATAGACCTTAAGGTCCATGGATGGATAAGTACAAAATCTGAAACAAATCCAGCAACAGGGTTTTGGGTAATCATACCCAGCAATGAATTTCGATCAGGTGGCCTTGTTAAACAAAATCTTACCTCCCATGTTGGCCCCATCAGTCTTTCGATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTCTTAAACTCCAACCCAATGAGCCATGGAACAAAGTTTTTGGGCCAACTTTTGTCTATCTTAACACCTTGTTGGATGATCATGAGGATCCACTAGAGCTTTGGGAGGACGCCAAATACCAGATGAACAAGGAAGTACAAAGTTGGCCCTATGATTTTCCAGCTTCAGATGATTTTCAAAAGTCAAACCAACGTGGCAGCGTTTGTGGCACATTACTAGTTCGTGACAGGTGTGTAAGTGACGAGTGCATAATAGCGCAAGGTGCATACATAGGATTGGCACCACCGGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATATCAATTTTGGACCAAAGCAGACGAGGAAGGCTACTTTTCAATCGATAATATAAGGAGTGGGGATTACAATCTATATGCATGGGTTCCGGGTTTTATCGGAGAATATTGGAATAATGAAGTCCTCAAAATAACTCCAGGTTGTGAAATAAATCGTGGTGACATAATTTATGAGCCTCCAAGAGATGGTCCAACATTATGGGAGATTGGAATTCCTGATCGTTCTGCTGCTGAGTTCTATGTTCCAGATCCTAATCCAAAATTCATAAACAAGCTTTATATTGACCATCCAGATAAGTTTAGGCAATATGGCTTGTGGGAAAGATATGCAGAGTTATACCCAAATGAAGATTTAATTTATACAGTTGGAATCAGTGACTATACAACAGATTGGTTCTATGCCCAGGTCACCAGGAAGAAAAATGATGGTAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTAGATGATGTGGAAGCAAATGGAATCTATAAACTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAGTTACAAGTTAGAGTAAATGATGTGAAACAAGATCCTCCACTATTTACTACGGGTGTGATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTTTTCAACATTAATGTGTCAAGTATTTTGCTATCCAAAGGAGATAATACCATATTTCTAACACAAACTATGGCTATTGGTCCCTTGGCTCGTTTTCAAGGAATAATGTATGACTATATTCGGTTAGAAAGTCCCAATCCTGATTCGATCCATTAA 1947 0.396 MSSHAVQLHVKKNHVVMDNGILQVYLSNPDGFVTRIQYNGIDNLLEALNENNNRGYWDDVWSEAGSTGTTGTSERIVGTSFKVIMETEEQVEISFSRIWDPSLKGKQSALNIDKRYVMLRNSSGFYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAMADNRQRLMPLPDDRSPERGEELIPPEAVLLVNPLEPEFAGEVDDKYQYSSENIDLKVHGWISTKSETNPATGFWVIIPSNEFRSGGLVKQNLTSHVGPISLSMFLSAHYAGEDIVLKLQPNEPWNKVFGPTFVYLNTLLDDHEDPLELWEDAKYQMNKEVQSWPYDFPASDDFQKSNQRGSVCGTLLVRDRCVSDECIIAQGAYIGLAPPGDVGSWQRECKGYQFWTKADEEGYFSIDNIRSGDYNLYAWVPGFIGEYWNNEVLKITPGCEINRGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFINKLYIDHPDKFRQYGLWERYAELYPNEDLIYTVGISDYTTDWFYAQVTRKKNDGSYQGTTWQIKFNLDDVEANGIYKLRLALASANVSELQVRVNDVKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNINVSSILLSKGDNTIFLTQTMAIGPLARFQGIMYDYIRLESPNPDSIH 648
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03478 648 Gene3D - 336 429 - -
Trre10g03478 648 Pfam Rhamnogalacturonate lyase family 6 203 IPR010325 -
Trre10g03478 648 Coils Coil 552 572 - -
Trre10g03478 648 FunFam Rhamnogalacturonate lyase B 336 435 - -
Trre10g03478 648 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Trre10g03478 648 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Trre10g03478 648 CDD RGL4_C 450 640 - -
Trre10g03478 648 Pfam Polysaccharide lyase family 4, domain III 448 639 IPR029411 -
Trre10g03478 648 CDD RGL4_N 8 298 - -
Trre10g03478 648 SUPERFAMILY Starch-binding domain-like 382 422 IPR013784 GO:0030246
Trre10g03478 648 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 10 643 - -
Trre10g03478 648 CDD RGL4_M 339 438 IPR029413 -
Trre10g03478 648 Gene3D - 446 640 - -
Trre10g03478 648 Gene3D - 5 276 IPR014718 GO:0030246
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03478 Trre-Chr10 44504890 44512422 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03478 1 643 Polysaccharide Lyase AT1G09890 64.230 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03478 K18195 - gmx:100815677 1124.77