Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03458 ATGGCGGAGGAGAGACGACGACATGAACTCGAACAGAAACTCGCGGGGGAACTCGCCATGGTACCCCCGTGCTTCATCGAAGGCGTCGAAAAGATGTCGGTTAACGAAATCAACGAAAAGATTGAGATATTTAAGAAGCAATATAACGATTATTATCTAACGTTATCTGACGGAGGTGCCCAATTCCGTGCTGGGTGGGAGTCGTATGAAAGAGAATTGCGCAAACGGAAGCATGCTTCTTCTCCTACCTTTCCCCCGCAAGTCCCACAACTGATTTACAATGAGATCTTCATAACCCTTCCCCCGCATCTCCGTTGGGCTTACAACAAGATGCAGATGGAAATTTGTTCTTGTCTTTACCATCTGAAATATAAGAGGAATGATTCAGAAATCGAATCCAAAGTGTATTCTTTAATCTTGAAAATGAGAAAATTGTGTGTGGATTCTGATTTGGCAAAGCTTGAAGAAACTCCGATCCTTACCTTTCTGGAGAGTATCTCTGGATGGGGTGCAGCACCGAAGAAGTTAGCGTTGAATAGCGACCAACAACCATACTGCAGCAATTGTGGATGCTACTGTGATGTGGTTTTCACAACCTGTGATCACCCTTTTTGCATTAATTGCATTGTTGAATACCTCTGGTCAGATAACAGTGTGAAGTGTCATGTTTGCCGCAATGAGGTAAAGGCTGTTGATAGTTCGATGGCGCAAGGCACACCATCAAAATTCAACACTCTCATGCCACTATTGATCAAGGACAAATGCAAAAGTATTGTTTTGTGTGAGTTCCGAAAACCTTTACTTAAGCTTCAATCTGCTTTGAAGTTGCATAATACCATAGGAAAGACTTGCACCACAAATACTGATTACAGCTGTAAAGAGATTCGGGTTCGGAAATTTTGTAACAGATCAGAGATTAAAATTCTGTTCGCTACCTTAGATCAGCTAGACTTTCTCTCACAACAGGACCTTGGTTGTTTTTCCAAGATGTATATCATAAGCGCCATACCGATAGCATTGGTACAGCAAGCGATTGCTTTGATTCATGGCCCTCGACAAGTTGAGGTGTTCAAGGTTACGTCCCATACTACTGTTGAAGGGGAAATCATGGGGAATGATACTGGCCACTTAAAAGAAGGTAATTTAATCTTCACGATTGAAGAATTAAGGCGCTTGTTTGGATTGGGTTAG 1191 0.4232 MAEERRRHELEQKLAGELAMVPPCFIEGVEKMSVNEINEKIEIFKKQYNDYYLTLSDGGAQFRAGWESYERELRKRKHASSPTFPPQVPQLIYNEIFITLPPHLRWAYNKMQMEICSCLYHLKYKRNDSEIESKVYSLILKMRKLCVDSDLAKLEETPILTFLESISGWGAAPKKLALNSDQQPYCSNCGCYCDVVFTTCDHPFCINCIVEYLWSDNSVKCHVCRNEVKAVDSSMAQGTPSKFNTLMPLLIKDKCKSIVLCEFRKPLLKLQSALKLHNTIGKTCTTNTDYSCKEIRVRKFCNRSEIKILFATLDQLDFLSQQDLGCFSKMYIISAIPIALVQQAIALIHGPRQVEVFKVTSHTTVEGEIMGNDTGHLKEGNLIFTIEELRRLFGLG 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03458 396 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 194 235 IPR013083 -
Trre10g03458 396 ProSitePatterns Zinc finger RING-type signature. 200 209 IPR017907 -
Trre10g03458 396 ProSiteProfiles Zinc finger RING-type profile. 186 225 IPR001841 -
Trre10g03458 396 SUPERFAMILY RING/U-box 185 231 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03458 Trre-Chr10 44311974 44313437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03458 73 275 RAD5 or RAD16-like Gene Family AT5G05130 27.826 4.50e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03458 - K15711 cpea:104395086 50.0618