Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03457 ATGGCGGAGGAGAGACGACGACATGAACTCGAACAGAAACTCGCGGGGGAACTCGCCATGGTACCCCCGTGCTTCATCGAAGGCGTCGAAAAGATGTCGGTTAACGAAATCAACGAAAAGATTGAGATATTTAAGAAGCAATATAACGATTATTATCTAACGTTATCTGACGGAGGTGCCCAATTCCGTGCTGGGTGGGAGTCGTATGAAAGAGAATTGCGCAAACGGAAGCAGCATGCTTCTTCTCCTACCTTTCCCCCGCAAGTCCCACAACTGATTTACAATGAGATCTTCATAACCCTTCCCCCGCATCTCCGTTGGGCTTACAACAAGATGCAGATGGAAATTTGTTCTTGTCTTTACCATCTGAAATATAAGAGGAATGATTCAGAAATCGAATCCAAAGTGTATTCTTTAATCTTGAAAATGAGAAAATTGTGTGTGGATTCTGATTTGGCAAAGCTTGAAGAAACTCCGATCCTTACCTTTCTGGAGAGTATCTCTGGATGGGGTGCAGCACCGAAGAAGTTAGCGTTGAATAGCGACCAACAACCATACTGCAGCAATTGTGGATGCTACTGTGATGTGGTTTTCACAACCTGTGATCACCCTTTTTGCATTAATTGCATTGTTGAATACCTCTGGTCAGATAACAGTGTGAAGTGTCATGTTTGCCGCAATGAGGTAAAGGCTGTTGATAGTTCGATGGCGCAAGGCACACCATCAAAATTCAACACTCTCATGCCACTATTGATCAAGGACAAATGCAAAAGTATTGTTTTGTGTGAGTTCCGAAAACCTTTACTTAAGCTTCAATCTGCTTTGAAGTTGCATAATACCATAGGAAAGACTTGCACCACAAATACTGATTACAGCTGTAAAGAGATTCGGGTTCGGAAATTTTGTAACAGATCAGAGATTAAAATTCTGTTCGCTACCTTAGATCAGCTAGACTTTCTCTCACAACAGGACCTTGGTTGTTTTTCCAAGATGTATATCATAAGCGCCATACCGATAGCATTGGTACAGCAAGCGATTGCTTTGATTCATGGCCCTCGACAAGTTGAGGTGTTCAAGGTTACGTCCCATACTACTGTTGAAGGGGAAATCATGGGGAATGATACTGGCCACTTAAAAGAAGGTAATTTAATCTTCACGATTGAAGAATTAAGGCGCTTGTTTGGATTGGGTTAG 1194 0.4238 MAEERRRHELEQKLAGELAMVPPCFIEGVEKMSVNEINEKIEIFKKQYNDYYLTLSDGGAQFRAGWESYERELRKRKQHASSPTFPPQVPQLIYNEIFITLPPHLRWAYNKMQMEICSCLYHLKYKRNDSEIESKVYSLILKMRKLCVDSDLAKLEETPILTFLESISGWGAAPKKLALNSDQQPYCSNCGCYCDVVFTTCDHPFCINCIVEYLWSDNSVKCHVCRNEVKAVDSSMAQGTPSKFNTLMPLLIKDKCKSIVLCEFRKPLLKLQSALKLHNTIGKTCTTNTDYSCKEIRVRKFCNRSEIKILFATLDQLDFLSQQDLGCFSKMYIISAIPIALVQQAIALIHGPRQVEVFKVTSHTTVEGEIMGNDTGHLKEGNLIFTIEELRRLFGLG 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03457 397 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 195 236 IPR013083 -
Trre10g03457 397 ProSitePatterns Zinc finger RING-type signature. 201 210 IPR017907 -
Trre10g03457 397 ProSiteProfiles Zinc finger RING-type profile. 187 226 IPR001841 -
Trre10g03457 397 SUPERFAMILY RING/U-box 186 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03457 Trre-Chr10 44311974 44313437 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03457 75 276 RAD5 or RAD16-like Gene Family AT5G05130 27.074 3.13e-08 53.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03457 - K10632 cpea:104395086 50.0618