Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03454 ATGGAACCATCAATGTTCGGAAACTCCACGCCCTTGAACGTTACCAGAGAAACTGAAGACGGTTCCGGTCCTGACTCCGCCATCGAAGGTAACCATCACATTCACTTCGAAACTGTTGATGATGGTAGTGGCGGTTTTGTTGTTGAGGATGTTACCTCCGACGCTGTTTATGGCCACGGCGGTGGAAACTCTGAATTAGCTATTCAACGTTTCGAAGATTCTGATCAACTTACGCTTTCTTTTCGTGGTCAAGTTTATGTTTTCGATTCTGTTACGCCTGATAAGGTTCAATCGGTTTTGTTACTGTTGGGTGGATGTGAACAACCTCAAGCGGATTCAACATATGTGGATCCGGTGCCACAACAAAGTCAGAGGGAATCAATGGAATATCCGAAATGCATTCAATCACATCGACAAGCCTCATTAATTAGGTTCCGGCAGAAGAGGAAAGAAAGATGCTTTGAGAAGAAAGTTAGATATGATGTACGGCAAGAAGTTGCACTCAGGATGCAGAGAAACAAGGGTCAATTTACTTCATCTAAGAAACAAGATGGAGCCAATGGTTGGGGTACAGACCAAGATTCTGGGCAGGATGACAGTCAATCAGAAACCTCTTGCACACATTGTGGCACAAGTTCAAAATCAACACCGATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTATTGGGCAAATAGGGGTGCTTTGAGAGACCTTTCTAAGAGACATCATGAACCATCTATTGTACCAGCCGAGCATGTTGATCGAGGTAATAGCTCAGACTGTGGAACAGCAACCATCCCTTCACACAATAATCTTGCTGCTTTCTCCGAAAATAATAACCAAGCCTTGGCAGCTGATCGTTAA 888 0.4482 MEPSMFGNSTPLNVTRETEDGSGPDSAIEGNHHIHFETVDDGSGGFVVEDVTSDAVYGHGGGNSELAIQRFEDSDQLTLSFRGQVYVFDSVTPDKVQSVLLLLGGCEQPQADSTYVDPVPQQSQRESMEYPKCIQSHRQASLIRFRQKRKERCFEKKVRYDVRQEVALRMQRNKGQFTSSKKQDGANGWGTDQDSGQDDSQSETSCTHCGTSSKSTPMMRRGPSGPRSLCNACGLYWANRGALRDLSKRHHEPSIVPAEHVDRGNSSDCGTATIPSHNNLAAFSENNNQALAADR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03454 295 SMART tify_2 70 105 IPR010399 -
Trre10g03454 295 MobiDBLite consensus disorder prediction 1 20 - -
Trre10g03454 295 CDD ZnF_GATA 205 249 IPR000679 GO:0006355|GO:0043565
Trre10g03454 295 Gene3D - 196 254 IPR013088 GO:0006355|GO:0008270
Trre10g03454 295 ProSiteProfiles GATA-type zinc finger domain profile. 200 259 IPR000679 GO:0006355|GO:0043565
Trre10g03454 295 PANTHER GATA TRANSCRIPTION FACTOR 28 29 264 IPR045280 GO:0006355
Trre10g03454 295 MobiDBLite consensus disorder prediction 173 223 - -
Trre10g03454 295 Pfam CCT motif 138 180 IPR010402 GO:0005515
Trre10g03454 295 ProSiteProfiles CCT domain profile. 138 180 IPR010402 GO:0005515
Trre10g03454 295 ProSitePatterns GATA-type zinc finger domain. 206 233 IPR000679 GO:0006355|GO:0043565
Trre10g03454 295 MobiDBLite consensus disorder prediction 173 219 - -
Trre10g03454 295 SMART GATA_3 200 253 IPR000679 GO:0006355|GO:0043565
Trre10g03454 295 Pfam GATA zinc finger 206 241 IPR000679 GO:0006355|GO:0043565
Trre10g03454 295 Pfam tify domain 74 104 IPR010399 -
Trre10g03454 295 ProSiteProfiles Tify domain profile. 70 105 IPR010399 -
Trre10g03454 295 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 202 259 - -
Trre10g03454 295 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03454 Trre-Chr10 44272180 44277721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03454 56 294 Tify Gene Family AT4G24470 51.373 5.62e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Trre10g03454 CCT 4.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03454 - - pvu:PHAVU_008G182900g 403.29