Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03449 ATGGCTAGAATCCAAAGAAAGCTCTTCCCAACAGAAACTACCACAAACCAAACATTAGATTGTTATGGCTTTTGTGACCCTTCATGTCCTTCAAATTGTTACACTAATACAAATTACTATTTCACACCCCCACCACTAGAACACACAACACAAATTAACCATGTTTCCTCCTACTTCATCATCCTCATTTCATTATTCTCATTGATTTTTGTAATCATTGGTTTTTATGTGATCAAAGTGAAATGCTATAATGAAATGTGTGGTTGGAGAATCAATAACTCTATTCGCTCACAAACCGAAATCTCCGAAGATTTTCTCAACGAAAATCAGGTCGGTCACAATCACAATCACGATCACCCCGTGTGGCTCATTGCTACAGTTGGTTTGCAACAATCGATTATAAATTCGATTACGGTTTCCAAGTATAGAAAAAATGAAGGGTTAATTGAAGCAACAGAATGTTCTGTTTGTTTGAATGAATTTCATGAAGATGAAACTTTAAGATTATTGCCAAAGTGTAGTCATGCTTTTCACATATCATGTATTGATACTTGGTTGAGATCTCATACTAATTGTCCTCTTTGTCGAGCCGGTATTGTTTCCAACAATGTTACTCCTGAAGTAACCGTGTCGAATTCGGAACAAGAAAATAACAACTTGGGAAGAAATCAAGATACTCAAATGGATAATCCAAGGAATGATCAACAAGATGAGGTAAGCAACAATATTGTTATCAATGTGGCATTCGAAAATATGGTCGGAACAATGAGAGAATCAAGTGATGAATCAAATTACAAGGAGCAAATTATGAATGATGAGATGAAAATTGAGGAGGGTTCTGTTTCAACTGATCCTAGAAGCCATCATCATGAAGTTATTCTTTTGAAGGTTATTGCTCAAAAAAATAGTAAAACAATGCGTCGGTGTTCAATTGAAGAGCGTTTGCATGTAAGGCCAGTAGCTATGAAAAAGTCTTTCACTCTACATGGAAGGAAGAGTTTTAAAACAAGATATGTGACTACAATTCAAGACTAA 1035 0.3546 MARIQRKLFPTETTTNQTLDCYGFCDPSCPSNCYTNTNYYFTPPPLEHTTQINHVSSYFIILISLFSLIFVIIGFYVIKVKCYNEMCGWRINNSIRSQTEISEDFLNENQVGHNHNHDHPVWLIATVGLQQSIINSITVSKYRKNEGLIEATECSVCLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRAGIVSNNVTPEVTVSNSEQENNNLGRNQDTQMDNPRNDQQDEVSNNIVINVAFENMVGTMRESSDESNYKEQIMNDEMKIEEGSVSTDPRSHHHEVILLKVIAQKNSKTMRRCSIEERLHVRPVAMKKSFTLHGRKSFKTRYVTTIQD 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03449 344 Pfam Ring finger domain 153 196 IPR001841 -
Trre10g03449 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 129 204 IPR013083 -
Trre10g03449 344 MobiDBLite consensus disorder prediction 208 240 - -
Trre10g03449 344 FunFam RING-H2 finger protein ATL54 129 202 - -
Trre10g03449 344 PANTHER RING-H2 FINGER PROTEIN ATL16 41 293 IPR044600 GO:0016567|GO:0016740
Trre10g03449 344 CDD RING-H2_EL5-like 153 196 - -
Trre10g03449 344 SMART ring_2 154 195 IPR001841 -
Trre10g03449 344 SMART FANCL_C_2 150 203 - -
Trre10g03449 344 ProSiteProfiles Zinc finger RING-type profile. 154 196 IPR001841 -
Trre10g03449 344 SUPERFAMILY RING/U-box 153 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03449 Trre-Chr10 44242152 44243186 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03449 1 205 C3H Transcription Factor Family AT1G72220 45.923 1.94e-59 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03449 - - mtr:11433251 568.54