Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03448 ATGTGTGGTGTGCTGAATTTTCAAGACAAGCAAAGACTTGTCCATGAGGTTGCTCGTAAGTCCAAAGATGCCCCAAATATACTTCAAGCATTTACTCGCCGGGAACTCCTAGAATTAATCTGTGCTGAATTAGGCAAAGAAAGGAAGTACACGGGATATACTAAGGATCAGATGATAGAACATCTTCTGAAGTTAGTTTCTAAGAAATCCAACCTGCACGTTGAACAAAATGCTGTTGCTCATTCTCCTGCCAAAAGTTGCATAGGATCTAAACGGAAAAAAGGACATCCATCTCCTGATTTACATAATGTTCAATTAGAGAACACTAATAAGGAAACAATGAAGACCTTAGTGTGTCAGAATGTTGCATGCAAAGCTACGTTGAATCCAGAAGATTCGTTTTGCAAGAGATGTTCTTGTTGTATATGCCGTTGTTACGATGATAACAAGGATCCTAGTTTGTGGTTGACCTGTACCTCTGATAATCCCAATGAAGGGTCATGTGGAATGTCATGTCATTTGCAATGTGCTTTGAGTAATCAAATGTCTTGCATTTTGAAGGGAAGTTGCGGTAAAACCTTGGACGGAAGCTTCTATTGTGTTTCTTGTCGAAAAATTAATGACTTAATGAGGACATGGAAAAAGCAATTATTGGTTGCCAAAGAAGCAAGAAGAGTTGACATACTCTCTTTGCGAATATCATTGGCCCACAGAATTCTCATAGGAACAAAAGTCTACAAGGAAGTGCAAAGGATTGTGGAAACTGCTCTCAAATTACTGGAGAATGAAGTGGGACCTCTGGATCATGTATATGCTAGGATGACGCGTGGAATTGTGAGCAGACTCTCATGTGGTGCCGAGGTTCAGAAGTTGTGCTCTACTGCAATTGAATGTTTTGATTTGAAGTTTTCTGAACTCTTTTCTAGCTGTGCAGAAAAGAAAGAAGCACCAACATGCTCTTTACATTTTGAAGAGTGTCTTCCTACCTCAGTGGTCATTGTGCTTGAATACAAAGACAAACTTTTAAAGAACTTTCTAGGTTGCAGGCTTTGGCACGGAAAATCAACAATGGACTATCCAGAACAACCCACTTTCATTGTTTTGAGGCCCGAGAAAAGATTCAAGTTAGAAAACCTCACACCTTCAACTGAGTACTCTTGCAAAGCTTCTATATTCAGCAGCACAGGGATTTTGGGTGCAGCAGAAGCTAAATGGGTGACGCCTTGTCAACCACCTTCAAAAACTATTCGACATATTGCAAACCATACAACTATTAACACATGCGCACCAAACCAATCAACTATCAGGGACAGGTTTGAAGAGTTCCTCAGCAAGCCCCCAACGATAGAACCTTTTTCATATAAAAGTTTTGCAGCGGTTCCACCAGCCACACCTTCTAAATCCAATGAAATGAGACAACTTACTGGTTTGAATTGTAGAAAGCGCGTGAAAGAAAATGATTACGAGTATTCTGTGAGGGTAGTCAAATGGTTAGAGCATCAAGGGCACATAGACGAAGTCTTTAGAGTGAAGTTTCTCACATGGTTCAGTCTCAAGGCTAATCAGCAAGAGAGAAGGGTGGTTAGTGCTTTTATTGATGCATTAATTGATGACCCTGCAAGCTTAGCAGACCAGCTAATACACACTTTCACCGACGAAATTTGTTGCGACCAAAAACCTTAG 1683 0.4046 MCGVLNFQDKQRLVHEVARKSKDAPNILQAFTRRELLELICAELGKERKYTGYTKDQMIEHLLKLVSKKSNLHVEQNAVAHSPAKSCIGSKRKKGHPSPDLHNVQLENTNKETMKTLVCQNVACKATLNPEDSFCKRCSCCICRCYDDNKDPSLWLTCTSDNPNEGSCGMSCHLQCALSNQMSCILKGSCGKTLDGSFYCVSCRKINDLMRTWKKQLLVAKEARRVDILSLRISLAHRILIGTKVYKEVQRIVETALKLLENEVGPLDHVYARMTRGIVSRLSCGAEVQKLCSTAIECFDLKFSELFSSCAEKKEAPTCSLHFEECLPTSVVIVLEYKDKLLKNFLGCRLWHGKSTMDYPEQPTFIVLRPEKRFKLENLTPSTEYSCKASIFSSTGILGAAEAKWVTPCQPPSKTIRHIANHTTINTCAPNQSTIRDRFEEFLSKPPTIEPFSYKSFAAVPPATPSKSNEMRQLTGLNCRKRVKENDYEYSVRVVKWLEHQGHIDEVFRVKFLTWFSLKANQQERRVVSAFIDALIDDPASLADQLIHTFTDEICCDQKP 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03448 560 Pfam PHD - plant homeodomain finger protein 119 238 IPR032881 -
Trre10g03448 560 PANTHER VIN3-LIKE PROTEIN 2-RELATED 4 424 IPR044514 GO:0010048|GO:0040029
Trre10g03448 560 MobiDBLite consensus disorder prediction 83 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03448 Trre-Chr10 44234308 44237074 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03448 2 407 PHD Gene Family AT4G30200 39.374 6.96e-82 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03448 - - gmx:100785502 885.945