Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03445 ATGGACCGTGCAAAAATACCTATGAAATACATTCAAAAAGAGAAATCTCGCAAACTAGCTTTCAATCAGAGAACAAATGGATTAAGGAATAAAATTTTCGAATTTTCTAAGTCTGGAGCAAAAGTTTGCTTAATTTTGTACAATGATGATGATAATAATAATGTTGGACCAATGACATGGCCAGAAGACCCTACTAGTGTAAACTCAATGCTTCAAGAATATGAGCATCAAAAAATAGAAACACCTCCTAAAATATTTGATGTCAAAGATTACTTTGAAAATAAAAAATGTAAAGCTGAAGCTGCGATTATCAAAGTGAGGAAAGAAATTCTCAAGAAGAAGTATCCAACTTGGCATCCAAATTTCAATAACATGGAAGAGAATAATCTCATTTCTTTTATTACTATTATAGAGAAAAAGATTGAAGTTTGTAATGAAAAAATTCACATGCTGAAAAATAATGTGCAACAAAGTGAAACTAATTTCTTGCAAAGCACTCCTCATGTGCAAATTATGGTTCAAGAGGGTGTTACCGTACCTGAAATGCAACGTTGTGAAAATTCGGAGGAAAAGCCTTGGGAATACCTGCAGATTCCTACTTCTGTGAAGTTAACTGATGATATTAATGAGATGACGGATTTCACCAATCTTGTTGATTTGCCTCCTAGTTCATCAACAAAGCAACTTGGTGAAGTTGTGAAGTGTGGTAATGAAGTGGTTAATCATGATGACTATTTAGCTACTCAATTTGCTGATCCTGATGATTGGATTAATCAACTTGATCCTGATATTTTGAATTGGGCTAGTCAACCAAAGGAGTTTTCTTGGAAAGATTTTTCAACTTAG 846 0.3345 MDRAKIPMKYIQKEKSRKLAFNQRTNGLRNKIFEFSKSGAKVCLILYNDDDNNNVGPMTWPEDPTSVNSMLQEYEHQKIETPPKIFDVKDYFENKKCKAEAAIIKVRKEILKKKYPTWHPNFNNMEENNLISFITIIEKKIEVCNEKIHMLKNNVQQSETNFLQSTPHVQIMVQEGVTVPEMQRCENSEEKPWEYLQIPTSVKLTDDINEMTDFTNLVDLPPSSSTKQLGEVVKCGNEVVNHDDYLATQFADPDDWINQLDPDILNWASQPKEFSWKDFST 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03445 281 Coils Coil 141 161 - -
Trre10g03445 281 ProSiteProfiles MADS-box domain profile. 1 36 IPR002100 GO:0003677|GO:0046983
Trre10g03445 281 Gene3D - 13 101 IPR036879 GO:0003677|GO:0046983
Trre10g03445 281 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Trre10g03445 281 SMART madsneu2 1 62 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03445 Trre-Chr10 44184465 44185310 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03445 1 142 Type I MADS-box Gene Family AT5G55690 28.082 2.52e-11 60.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Trre10g03445 SRF-TF 2e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03445 - - tpra:123886171 298.901