Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03439 ATGGCTGATTTTCAGACCTCTACCCACCGATCCAAGTGGATTTTCTCTCCTCAAAAACTGATCGAGAAATATACAGATGCTAATCAGAGAGCCAAGCAAACCCTAGAGCAGTGTGGAGCAACTCTAATGGAAGTAGATGATGATGGGTCTTTGTCATATCCGGAATCCCAGATGACTGCAAACAATAGTGCTGAAAAACATTCTCGGATAAAACCTCTTAGTATTGAAGAGGAGCAATGTATAAAGGCAACAGCCCTCGTATTTTTTAAAAGGTTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAAAATATAATGTTGACATGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCGGCTGAGGAGCTTGGTAAGGTGATTTCACAGGATCATCAAATGATTCTCAATAATGAGATGATAGTTTACCAGAGTCTGGAATTTGATCTTATTGTTTATGCTCCATATCGCTCAGTTGAAGGTTTTACAGATTATATGGAGGAATTTTGCAATGCCGGTGAGGACGAGCTTCAAATGCTCAAGGCTTTGCAAAATACAGCAAGACTCGAAGTTGATAAAATGATGCTTACAGATGCACCACTCTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCACTACGTACCTCAAATGCTCTCCATAAAGTTCTTGACTTTGATAGTTTTCTGAGCAGAATTTTTTCCCGTCAGAATTCTACGCACACAATGGCCGACCTTCTTGAATCATTGGATGCAATTGAATCTTGGGTTAGAAAATATAGAAGTCCTTCAGAGAAGGAATTGAAGCATATCAACCGGAAACTGAAGTCTTGTTGGGGTCATAGTTCTCATGACGAGGGAAAGAAGAGGGAGAAGAAATCAAAGCACAAGTCCAGAAAGAGCTCAAACGAAGCACAAAATGCTTAG 933 0.403 MADFQTSTHRSKWIFSPQKLIEKYTDANQRAKQTLEQCGATLMEVDDDGSLSYPESQMTANNSAEKHSRIKPLSIEEEQCIKATALVFFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKVISQDHQMILNNEMIVYQSLEFDLIVYAPYRSVEGFTDYMEEFCNAGEDELQMLKALQNTARLEVDKMMLTDAPLLFPPGQLALAALRTSNALHKVLDFDSFLSRIFSRQNSTHTMADLLESLDAIESWVRKYRSPSEKELKHINRKLKSCWGHSSHDEGKKREKKSKHKSRKSSNEAQNA 310
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03439 310 Gene3D - 3 153 - -
Trre10g03439 310 Pfam Cyclin, N-terminal domain 79 153 IPR006671 -
Trre10g03439 310 Pfam Cyclin C-terminal domain 158 264 IPR031658 -
Trre10g03439 310 MobiDBLite consensus disorder prediction 280 310 - -
Trre10g03439 310 CDD CYCLIN_AcCycH_rpt2 156 283 - -
Trre10g03439 310 PANTHER CYCLIN 9 304 IPR043198 GO:0006357|GO:0016538
Trre10g03439 310 SUPERFAMILY Cyclin-like 6 155 IPR036915 -
Trre10g03439 310 FunFam Cyclin h 156 261 - -
Trre10g03439 310 Gene3D - 156 261 - -
Trre10g03439 310 SMART cyclin_7 68 147 IPR013763 -
Trre10g03439 310 SUPERFAMILY Cyclin-like 158 284 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03439 Trre-Chr10 44144062 44151400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03439 1 259 Core Cell Cycle Gene Families AT5G27620 58.929 5.25e-115 332
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03439 K06634 - gmx:547736 516.538