Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03438 ATGGCTGATTTTCAGACCTCTACCCACCGATCCAAGTGGATTTTCTCTCCTCAAAAACTGATCGAGAAATATACAGATGCTAATCAGAGAGCCAAGCAAACCCTAGAGCAGTGTGGAGCAACTCTAATGGAAGTAGATGATGATGGGTCTTTGTCATATCCGGAATCCCAGATGACTGCAAACAATAGTGCTGAAAAACATTCTCGGATAAAACCTCTTAGTATTGAAGAGGAGCAATGTATAAAGGTATTTTATGAAAACAAGCTACAAGAAGTGTGCAACAATTTCCACATAAGATCCAGGTATGCAAACTCTTCTATAGGTATTGCAACAGCCCTCGTATTTTTTAAAAGGTTCTATCTGCAATGGTCAGTGATGGAACATCAACCAAAAAATATAATGTTGACATGCATATATGCTGCTTGTAAGATAGAAGAAAATCATGTATCGGCTGAGGAGCTTGGTAAGGTGATTTCACAGGATCATCAAATGATTCTCAATAATGAGATGATAAGTCTGGAATTTGATCTTATTGTTTATGCTCCATATCGCTCAGTTGAAGGTTTTACAGATTATATGGAGGAATTTTGCAATGCCGGTGAGGACGAGCTTCAAATGCTCAAGGCTTTGCAAAATACAGCAAGACTCGAAGTTGATAAAATGATGCTTACAGATGCACCACTCTTATTTCCTCCTGGGCAGTTGGCCTTGGCTGCACTACGTACCTCAAATGCTCTCCATAAAGTTCTTGACTTTGATAGTTTTCTGAGCAGAATTTTTTCCCGTCAGAATTCTACGCACACAATGGCCGACCTTCTTGAATCATTGGATGCAATTGAATCTTGGGTTAGAAAATATAGAAGTCCTTCAGAGAAGGAATTGAAGCATATCAACCGGAAACTGAAGTCTTGTTGGGGTCATAGTTCTCATGACGAGGGAAAGAAGAGGGAGAAGAAATCAAAGCACAAGTCCAGAAAGAGCTCAAACGAAGCACAAAATGCTTAG 1005 0.397 MADFQTSTHRSKWIFSPQKLIEKYTDANQRAKQTLEQCGATLMEVDDDGSLSYPESQMTANNSAEKHSRIKPLSIEEEQCIKVFYENKLQEVCNNFHIRSRYANSSIGIATALVFFKRFYLQWSVMEHQPKNIMLTCIYAACKIEENHVSAEELGKVISQDHQMILNNEMISLEFDLIVYAPYRSVEGFTDYMEEFCNAGEDELQMLKALQNTARLEVDKMMLTDAPLLFPPGQLALAALRTSNALHKVLDFDSFLSRIFSRQNSTHTMADLLESLDAIESWVRKYRSPSEKELKHINRKLKSCWGHSSHDEGKKREKKSKHKSRKSSNEAQNA 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03438 334 PANTHER CYCLIN 77 328 IPR043198 GO:0006357|GO:0016538
Trre10g03438 334 Pfam Cyclin C-terminal domain 182 288 IPR031658 -
Trre10g03438 334 SUPERFAMILY Cyclin-like 182 308 IPR036915 -
Trre10g03438 334 CDD CYCLIN_AcCycH_rpt2 180 307 - -
Trre10g03438 334 SUPERFAMILY Cyclin-like 66 179 IPR036915 -
Trre10g03438 334 MobiDBLite consensus disorder prediction 304 334 - -
Trre10g03438 334 Gene3D - 181 285 - -
Trre10g03438 334 SMART cyclin_7 87 174 IPR013763 -
Trre10g03438 334 FunFam Cyclin h 180 285 - -
Trre10g03438 334 Gene3D - 63 180 - -
Trre10g03438 334 Pfam Cyclin, N-terminal domain 109 171 IPR006671 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03438 Trre-Chr10 44144062 44151400 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03438 1 283 Core Cell Cycle Gene Families AT5G27620 59.441 5.06e-120 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03438 K06634 - gmx:547736 539.65