Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03435 ATGGGTGATGCACCTTCTTTTAACCCATTCAGCATCAAATTTTTCCCCTTCTTCCCCATCATCATCGTCACCATCACCACCACGCTCATTCTAATCTCAAGTGCGGAAGATCACAATTCAAAAGAAAATGGAACAATTCATAGTCTTAAAGATGACGTCGATGGCGCTGTGGCGTCATCACCACCTCCTATATCATCAACGGATAGCTCCGGTCACGTGGCGAGGAAATTAGTTACATTTAAACCTAGCACAGCAGTGATAGTAGGTGTTTTAACAACCACATTTTCCCTTGCATTGCTACTCCTTCTATACGCCAAACATTGCAATAGTGGAAATGTATTTGCTGCTAGCAACGCAAATCTCGACGGGGAATCACGTTTGCACGAGAGAAAGAACTCCGGGATTGAGCGTACTATTGTGGAATCATTGCCGGTTTTCAAGTTTGAGTCATTGACAGGCCAAAAACATGGACTCGAATGTGCGGTTTGTCTCAACGGGTTTGAGGATCCTGAGGTACTTAGGTTATTGCCAAAATGCAAGCATGCTTTCCACATGGAATGTGTTGACACGTGGCTTGACGAACATTCCACGTGCCCACTTTGTCGTTATAAGGTGGATCCCAATGATATCGATCTTCCTCTGCAACAAAATGCAGAGGAAGATCAATTGTCATCTTCAAACATCGAAAATGGAAGAGTTATTAGTAATATTAACGACAATGTGTCACAACAAGAAAATGAAAATGTAGGTTCACAACATGTTTTGGAGAATAGTGGAACGTCCTGTAAGATTGAGTTAGACTCAAATCAAAATTCTAGTAGTAGTAATTCTAGAAATAATGTAATGAGCCAAGATGTCATTGGAGAGCATAGGTTAGATCACCGTATAATTTTGTCGCCTGCTTGTTCTTATACTTCACGCATTGGGGTCCAACAACGATGGAGCAATTTTGAATCAGGTGATATGCTCTATCTAAACTCCGATAGGATCATTAGTGATAATTCCTCTTCACAGTTGAATACCTTGCATGGGGGAAGGAGAACGGTGGTGGAGCATAATCGCAATCTTCTTGATGATGAGATGGAGAATGGTTTTGGTGGTGGTGGGAGGGGTGAGAGGAATTTGAGGACCGTCTCAGAGAGGGTAGGGATGAGTAGATTTTTTAGTAGGGAGAGATGGAGGGAAAGAGAGCATGGTAGTAGGGAAGAACAAGCGCGAGAATGTGAGAGAGTGACTTCGAGGTGGTTGCCTTGGATTTCTGGGCCAAAAACACATTGGTAA 1281 0.4278 MGDAPSFNPFSIKFFPFFPIIIVTITTTLILISSAEDHNSKENGTIHSLKDDVDGAVASSPPPISSTDSSGHVARKLVTFKPSTAVIVGVLTTTFSLALLLLLYAKHCNSGNVFAASNANLDGESRLHERKNSGIERTIVESLPVFKFESLTGQKHGLECAVCLNGFEDPEVLRLLPKCKHAFHMECVDTWLDEHSTCPLCRYKVDPNDIDLPLQQNAEEDQLSSSNIENGRVISNINDNVSQQENENVGSQHVLENSGTSCKIELDSNQNSSSSNSRNNVMSQDVIGEHRLDHRIILSPACSYTSRIGVQQRWSNFESGDMLYLNSDRIISDNSSSQLNTLHGGRRTVVEHNRNLLDDEMENGFGGGGRGERNLRTVSERVGMSRFFSRERWREREHGSREEQARECERVTSRWLPWISGPKTHW 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03435 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 210 IPR013083 -
Trre10g03435 426 ProSiteProfiles Zinc finger RING-type profile. 160 202 IPR001841 -
Trre10g03435 426 CDD RING-H2_EL5-like 159 202 - -
Trre10g03435 426 SUPERFAMILY RING/U-box 139 208 - -
Trre10g03435 426 SMART ring_2 160 201 IPR001841 -
Trre10g03435 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 61 417 - -
Trre10g03435 426 FunFam RING-H2 finger protein ATL43 135 209 - -
Trre10g03435 426 Pfam Ring finger domain 159 202 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03435 Trre-Chr10 44099021 44100301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03435 79 418 C3H Transcription Factor Family AT5G05810 36.010 5.79e-52 177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03435 K19041 - mtr:11437137 451.44