Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03425 ATGCTTCCTCCTTTAAGGAGATTCTATGGGTTCGAGAGCTGGATAGATAAAGATTCAGAAAAAATCAACGGTGAGAAATCAAAATCGGAGAGGAAATCAAAAGAAGCATGCAAGAGTCACAGGGAAGCTGAAAGGAGACGCAGACAGCGAATCAATGCTCATCTCTCCACTCTTCGCTCTCTCCTCCCCAACACCACCAAGTCGGATAAGGCATCGTTGCTAGCGGAAGTGGTGCAGCACGTGAAACGGTTAAGGAAGGAAGCTGATGACGTGGCGAACTGTCACAACGAGGAGTCATCAGCTTCGTGTAGTGGAGAACCCGGTTCGGTTGATTCTACTGAAGGAGGTGAGACATGGCCGTTTCCGGGGGAATCAGATGAGGCGACGGTGAGTTATTTTGGCGAGGAGGAAGGGGAACCGAAGCGGATGAAAGTGACAGTGTGTTGTGAAGACAGGCCGGGACTGAACCGGGATCTGACTAAAGCAATTCAGTCGGTTCGGGCGAGACCGGTTCGAGCGGAGGTAATGACGGTTGGAGGAAGGACCAAGAGTGTTATAGTGGTGGAGTGGTGTGAGGGAAAGGGTGGTGGTGGTGGTGGTGATGGAAGAGAGGAAAAGGAGGTTGAAGCTTTGGAAAGGGGTTTGAAGGCGGTGATAGAGAATCGGGCTTTTGTTGATTCTAGGATGGGCCCATTTATATTGGGCCTGAAACGGGCTCGGGTTAGTAATTCTGAGGAATGA 741 0.5061 MLPPLRRFYGFESWIDKDSEKINGEKSKSERKSKEACKSHREAERRRRQRINAHLSTLRSLLPNTTKSDKASLLAEVVQHVKRLRKEADDVANCHNEESSASCSGEPGSVDSTEGGETWPFPGESDEATVSYFGEEEGEPKRMKVTVCCEDRPGLNRDLTKAIQSVRARPVRAEVMTVGGRTKSVIVVEWCEGKGGGGGGDGREEKEVEALERGLKAVIENRAFVDSRMGPFILGLKRARVSNSEE 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03425 246 MobiDBLite consensus disorder prediction 95 111 - -
Trre10g03425 246 SUPERFAMILY ACT-like 141 219 IPR045865 -
Trre10g03425 246 SMART finulus 41 90 IPR011598 GO:0046983
Trre10g03425 246 Gene3D - 28 95 IPR036638 GO:0046983
Trre10g03425 246 MobiDBLite consensus disorder prediction 20 49 - -
Trre10g03425 246 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 35 84 IPR011598 GO:0046983
Trre10g03425 246 PANTHER TRANSCRIPTION FACTOR BHLH30 21 244 IPR045847 GO:0003700|GO:0006355
Trre10g03425 246 Coils Coil 243 246 - -
Trre10g03425 246 MobiDBLite consensus disorder prediction 93 127 - -
Trre10g03425 246 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 38 93 IPR036638 GO:0046983
Trre10g03425 246 Pfam Helix-loop-helix DNA-binding domain 37 84 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03425 Trre-Chr10 43923684 43924575 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03425 30 188 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 45.963 9.03e-33 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g03425 HLH 8.8e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03425 - - psat:127118672 332.798