Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03422 ATGTTCTCAAACTTTCAACAACAACAACAACAACAACATAACCTTTTCCAACCCTCTCGTGAATGCCAAACATCAGAAGAAGATGAAACCCGAAGCAGCGGTGGCCCAAGCCCAAAAACAGCCCACAAACCTTTCTCTGTAAGTTGCGGCGACGGTTCCACTGTTGAGATTGGTCGTAGGCCCAGAGGCCGTCCACCTGGCTCCAAAAACAAGCCCAAAAGCCACCAAATCATTATTAATCGCCAGCCCGACCCCGCGATGAGCCCACACATTCTTGAAATCCCTGAAGGAAGTGATGTCGTTGAAGCAATAGCCCGGTTCAGTAACCGAAGAAAAACCGGTTTATGTATATTATCCGGTTCAGGTACTGTGGCTAATGTTACACTCCGTCAAATATCTGCTCCTCCTGGCACCACCGTTACTTTTCACGGCCGTTTTAACATTCTCTCAATCTCCGCCACGTTCTTCTCCCCGTCGGAACCCTCACCGCCGATCCAAAAAGAATTCTCTATCTCTCTCGCCGGACCTCAGGGTCAGATCGTCGGAGGGTTTGTCGTTGGACGGTTGCTTGCCGTTAGTGCTGTGTTTGTGATTGCCGCTTCTTTTAACAATCCATCTTATCATAGGTTGCCTTTGGAAGAGGATGTTATGAATAACTCAGTCTCCGGTGGTGGTGGTGAGAAGTCCCCACCGCAGCACACTGGCGGTGAGGAGTCGTGTATGTATAGCGCTCAACTACCTTCTGATGTGATTTGGGCTACAACGCCAAGAACACATTTCTGA 783 0.4917 MFSNFQQQQQQQHNLFQPSRECQTSEEDETRSSGGPSPKTAHKPFSVSCGDGSTVEIGRRPRGRPPGSKNKPKSHQIIINRQPDPAMSPHILEIPEGSDVVEAIARFSNRRKTGLCILSGSGTVANVTLRQISAPPGTTVTFHGRFNILSISATFFSPSEPSPPIQKEFSISLAGPQGQIVGGFVVGRLLAVSAVFVIAASFNNPSYHRLPLEEDVMNNSVSGGGGEKSPPQHTGGEESCMYSAQLPSDVIWATTPRTHF 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03422 260 MobiDBLite consensus disorder prediction 1 21 - -
Trre10g03422 260 PIRSF ESCAROLA 1 255 IPR014476 GO:0003680
Trre10g03422 260 MobiDBLite consensus disorder prediction 1 74 - -
Trre10g03422 260 MobiDBLite consensus disorder prediction 218 239 - -
Trre10g03422 260 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 233 IPR014476 GO:0003680
Trre10g03422 260 CDD DUF296 89 199 IPR005175 -
Trre10g03422 260 Gene3D - 89 220 - -
Trre10g03422 260 Pfam Plants and Prokaryotes Conserved (PCC) domain 89 204 IPR005175 -
Trre10g03422 260 ProSiteProfiles PPC domain profile profile. 84 223 IPR005175 -
Trre10g03422 260 FunFam AT-hook motif nuclear-localized protein 88 221 - -
Trre10g03422 260 SUPERFAMILY AF0104/ALDC/Ptd012-like 86 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03422 Trre-Chr10 43899114 43899896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03422 51 257 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 56.444 3.21e-77 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03422 - - cam:101500910 352.829