Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03410 ATGGCACCACCAAGTTTTGATTTTGCAAATCTGTTTTGTAATGAAGACAGCATTATTTTTGATGACAATGATTTTGAGGGTCCAAATTCATTTGATACGTTGGATGAATCGTGGAGAGATGAATGTGATCCATATCTTAATCCAATTCCTCAATTTGATGAATCAATTCATCAGCAATTGGATGAACCAATTGTGTTGGTTCCACCACCATTGATGAGTGATGAGAGTTTGAAGGATTTGGTTGCAAAAGAATGTCATCACTTGCCTGCTAGTGATTATGTCAATAGGCTCAAATATGGTGATTTGGATTTGCAGGGTAGAATGGAAGCCGTTGAATGGATTGAAAAGGTTGCAATGCATTTTGGTTTTGGACCTCTTTGTTTGTACCTAGCTGTAAGCTTCATGGATCGCTTCCTTTCTGTAGTTGAAATGCGGGAGGAAAGAACTTGGACAATTCAACTCTTGGCTGTGGGTTGCTTGTATCTGGCGGCCAAAATCGATGAAACTGATGTTCCTCGAAATGCTGATATGCAGATGAAAGAAAAGAATTATTTTTTTGATAACAAAGAATTGCTGAAGATGGAGCTTATGGTGCTAAGCAAATTGAAATGGAGAATGCAAGGAATTACACCTTTCTCCTACATTGACTATTTCCTTAACAAGGTTAATGGTGATCAAGTTCCAATAGGAGATTCAGTGTTGCAATCTTTCAAACTCATACTGAGTACTGTAAGAGGAATTGACTTCATTCAATTCAGACCATCTGAAATTGCAGCAGCTGTTGCAGTGACATTATCTGTGAAGGGTGAAAACCAAACTGTTCAAATTGAGAAAGCAGTTTCTCTTCTGATTGAATACGTAAAAAAGGAGAAAGTAATGAAGTGTATTGAAATGATTCAACAGCTATTTTCAAGCAGTACTGATTCTGCAAATGCTTCTTCTGAATATTTCTCTCATGTGTCTCAAAATCCAATAGATGTTTTAGAAGAGCTATGTATCAACTACAAAAGTGATGACGACGACAACGCCAACAACAACAACAAAAATGCTACTTCACCACAAGCAAATTCTGCACACAATAGTCCTGATGCCAAACGCAAGAAGCTTAACATATAA 1116 0.3728 MAPPSFDFANLFCNEDSIIFDDNDFEGPNSFDTLDESWRDECDPYLNPIPQFDESIHQQLDEPIVLVPPPLMSDESLKDLVAKECHHLPASDYVNRLKYGDLDLQGRMEAVEWIEKVAMHFGFGPLCLYLAVSFMDRFLSVVEMREERTWTIQLLAVGCLYLAAKIDETDVPRNADMQMKEKNYFFDNKELLKMELMVLSKLKWRMQGITPFSYIDYFLNKVNGDQVPIGDSVLQSFKLILSTVRGIDFIQFRPSEIAAAVAVTLSVKGENQTVQIEKAVSLLIEYVKKEKVMKCIEMIQQLFSSSTDSANASSEYFSHVSQNPIDVLEELCINYKSDDDDNANNNNKNATSPQANSAHNSPDAKRKKLNI 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03410 371 MobiDBLite consensus disorder prediction 338 371 - -
Trre10g03410 371 Pfam Cyclin, N-terminal domain 78 206 IPR006671 -
Trre10g03410 371 CDD CYCLIN_AtCycD-like_rpt1 107 204 - -
Trre10g03410 371 Gene3D - 90 207 - -
Trre10g03410 371 PANTHER CYCLINS 79 308 IPR039361 -
Trre10g03410 371 ProSitePatterns Cyclins signature. 107 138 IPR006671 -
Trre10g03410 371 MobiDBLite consensus disorder prediction 344 360 - -
Trre10g03410 371 FunFam D6-type cyclin 90 207 - -
Trre10g03410 371 SMART Cyclin_C_2 209 331 IPR004367 -
Trre10g03410 371 Pfam Cyclin, C-terminal domain 209 314 IPR004367 -
Trre10g03410 371 SUPERFAMILY Cyclin-like 190 312 IPR036915 -
Trre10g03410 371 Gene3D - 77 298 - -
Trre10g03410 371 SMART cyclin_7 112 200 IPR013763 -
Trre10g03410 371 SUPERFAMILY Cyclin-like 71 206 IPR036915 -
Trre10g03410 371 CDD CYCLIN_AtCycD-like_rpt2 209 299 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03410 Trre-Chr10 43767468 43770764 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03410 74 339 Core Cell Cycle Gene Families AT2G22490 39.483 2.87e-66 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03410 K18810 - tpra:123922384 591.267