Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03403 ATGGAATTTGATGAGCAAGAGGAACAAGAAGAGGAGATGGAGATTCCAGAAACACAAACGCCGGTGGCAGCGAGTTATGACTCACGGTCTAAAACCGTCGCCGGAGTTGACGGTCGGAAAGGCACCGGAAACGGAAACAGCGGTGGTTTTTCATCGACGGTGAGGTATCGAGAATGTCAGAAGAATCATGCTGTGAGTTTTGGTGGCCATGCTGTCGACGGTTGTTGCGAGTTTATCGCCGCCGGTGAAGAAAACACACTTGAAGCTGTGATTTGTGCTGCCTGTAACTGTCACCGGAACTTTCACCGTAAAGAGATCGACGGTGAGACAGTTAGTTCATGTCAGCGGCCACAACCACAACCACCACCTCCACCGCAACCATACCACCACCAATTTCCATCTTATTATCACCGTGGTCCACCTTCCACCGCCGGTTACCTTCACCACCTTGCAACTCCGGTTGCACATCATAGACCATTAGCTCTCCCCGCTGCGGCATCCGGTGGTGGACTCAGCAGAGAAGAAGATGATATGTCAAACCCTAGCAGCAGTGGAGGAGGTGGTGGTGGTAACGGTGGTGGTGGTGGTGGTGGATCAAGGAAGAGATTTAGAACAAAATTCACTCAAGAACAGAAAGATAAGTTGCTAGCTTTTGCTGAAGAACATGGATGGAGAATTCAAAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAAAATTGTGTGAAGAGAAATGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 792 0.4798 MEFDEQEEQEEEMEIPETQTPVAASYDSRSKTVAGVDGRKGTGNGNSGGFSSTVRYRECQKNHAVSFGGHAVDGCCEFIAAGEENTLEAVICAACNCHRNFHRKEIDGETVSSCQRPQPQPPPPPQPYHHQFPSYYHRGPPSTAGYLHHLATPVAHHRPLALPAAASGGGLSREEDDMSNPSSSGGGGGGNGGGGGGGSRKRFRTKFTQEQKDKLLAFAEEHGWRIQKQDEAAIEQFCAENCVKRNVLKVWMHNNKNTLGKKP 263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03403 263 MobiDBLite consensus disorder prediction 1 15 - -
Trre10g03403 263 Gene3D - 186 260 - -
Trre10g03403 263 SUPERFAMILY Homeodomain-like 187 261 IPR009057 -
Trre10g03403 263 MobiDBLite consensus disorder prediction 164 202 - -
Trre10g03403 263 MobiDBLite consensus disorder prediction 1 51 - -
Trre10g03403 263 MobiDBLite consensus disorder prediction 116 130 - -
Trre10g03403 263 NCBIfam homeobox domain, ZF-HD class 200 257 IPR006455 -
Trre10g03403 263 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Trre10g03403 263 MobiDBLite consensus disorder prediction 109 139 - -
Trre10g03403 263 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 30 259 - -
Trre10g03403 263 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
Trre10g03403 263 FunFam Zinc-finger homeodomain protein 2 193 261 - -
Trre10g03403 263 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03403 Trre-Chr10 43664928 43665719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03403 7 259 ZF-HD Transcription Factor Family AT4G24660 47.059 4.65e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre10g03403 ZF-HD_dimer 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03403 - - gmx:100820567 305.834