Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03387 ATGGATTCTATGTCTTTGTTGAAAGATGGTATAGAAATTGTTGAATGTGATGTTGAAGTTATTCCAGCTATAGAGAAAAAGAAACGCGGAAGAAAGAGTAATGCGGAGAAGAAGGAAGCGTTAAGGAAAATGTTAGAGAACGATGATGATGATGTGGCAGTGACAAACATGGTAGAAAAGGAAGTGCAGAAGAAGAAGAAGAAGGATAATCGTGGTATGAAGAGAAAGATTATTATTGATGAAAATGATGCTGTGAAAGAGAAGAAGAAAGATAATCGTGGTAGAAAAAGGAAGATTATTCTAGATGATGTTTCTGAAGATGATGAAGATGAAGAAGAGGAGGAAGAAAATGGTGGTTTTGATAAGAAAAAGAAGAAGGAATTTTGTGGAAGAAAGAGAAATGAAACATATGTTATAAAGAGTGTTGGAAAAATGAAACATGATTGCATTTATGAGGAGGAAACAAAGATTAATGATGATGATGATGATGTTGTGGTGTCGAAGTATATGCTGGAATATCTTCTTCCATATTTAAGACAAATCGATCTACAACAAATGGAAGAGAAGGATATAGAAGCCAACATACAAGGGCTCTCACTCTCTGAGATAAACATTAAGGTTGCAGATTGCTCTAAAGATGACACTGCATACTGCGACAACTGCCAAACGTCGATATTTGACTACCACAGAAGCTGTACAAAATGCTCTTTTGACCTTTGTCTCCACTGTTGTTGGGAGCTTCGTTGTGGAAACCTTCTAGGTGGTGCAGATCCAATTGAGTTTGCGTTTATCAACCGAGGGCGAGATTATCTGCATGGTGGAAATGAAGAGACAATAATCAGAGAAAATGAATCTCATAGTGCCGTCCCACTTCGTAAATGGTCAAAATCTGGGTGGCATGCAGAAAGCGATGGCAGCATTGCCTGTCCGAAAGCCGATAATGAATGTGATCATGGTTTCCTTGAGCTGAAAACCATGCTTCCGCCAAATTGCGTCTCTGAGTTAGTATGTAAAGCAACACAACTTAAAGAAACAATTGAACTTAAAGATGCAAAGGAGACTCTTGATAATAGCTGCTCTTGTTTGAAGTCTGTTACGAACAATGCAGATGATATATCCGATAACATAAGGAAGTTAGCTTTTCGTGAACATTCCGATGACAATTTTTTATACCGTCCTAAGGCTGTAGATCTACATAATCATGAGAAGGATTTAAGACATTTTCAATGGCATTGGAGAAAAGGGGAGCCTGTAATTGTCAGCAATGTTCTTGAATCATGTACATCTGGTTTAAGCTGGGAATCACATGTCATGTGGCGTACTTTTCATCAGATAAGTGATACCGATCACAACTCATTTTTTAATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAAGTTTTAATGCGCACCATTTCTTTACTGGGTACACAAATGGTCGTAAGGATCAGCTTGATTGGCCTCAGTTATTGAAATTGAAAGATTGGGCTCTTAATTTATCTGAGGAACAATTGCCTCATCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCAAAGGCGCTCTTAACCTTGCTGTGAAGCTTCCAGATAATGTTCACATGAGACCATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTAATATGTCTGATGTTGTAAATGTGTTGACTCATATTGCTAAAGTGGAACCGGAAACTGCAAACATTGCGGCAATAAAAAATCTGAAACAAAAGCACCTTGAGCAAGACAAGAGAGAGCTACATGGTGATAATCAGCATGGAGATACCAATTTTGACATGCTTGATGATTCGTCTTCATCCATAACTGCTTCAGACGAGAAAAATAGTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGATGAACCTAAATTGAAGGAATATCTGAACAAGCATTTCAGAGAGTTCAGGCATGTTCATTGCTCTCCTTTAAAGCAGGTAATTCACCCGATCCATGATCAGACCTTTTATCTCACCATCGAGCATAAGAAGAGGCTTAAGGAGGAGTATGGAATTAAGCCATGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCTGCTGGTTGTCCCCACCAAGTTCGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCGTCCGTTTGACTGAGGAAATCCGCAAACTTCCGGTAAATCACAGTTCTGTACACGACAAATTGGAGGTGAAGAAAATGATTATCCATGCTATGCTTGATGTGGTCAAAAAGATGGACAAAGAAAGCGAGCGGCCGACTGAGTTACGCTATCGGTTCACGTGCAATAGGTTAGCTATTTTTCAATACAAGTGGGAGCTGAAAGTGAGCATGGCTACTGCAAAGGGAAAGAGTGTGCTGCATTTTCCAAAATTTATCAGCGATGAATGTTCGCTTCGTCGGGGTCAACAAATTCATGTAGTTTGTGATAACACTAAAGAAACAACCTGCTGTGATGTTATGAAGAATGGCACAAAACCACCTCAATACCATATAGGCCGTGGATGGTATGAGTTTGTTAGAAAGCTGAAACTGAAGAATGGCGATAAGATTGTGTTTACTCTCGACAATCCTCCTCGAGTGTTGAATGTCAGGGCAGTGAGATGTACCCAAAGTTGA 2724 0.3968 MDSMSLLKDGIEIVECDVEVIPAIEKKKRGRKSNAEKKEALRKMLENDDDDVAVTNMVEKEVQKKKKKDNRGMKRKIIIDENDAVKEKKKDNRGRKRKIILDDVSEDDEDEEEEEENGGFDKKKKKEFCGRKRNETYVIKSVGKMKHDCIYEEETKINDDDDDVVVSKYMLEYLLPYLRQIDLQQMEEKDIEANIQGLSLSEINIKVADCSKDDTAYCDNCQTSIFDYHRSCTKCSFDLCLHCCWELRCGNLLGGADPIEFAFINRGRDYLHGGNEETIIRENESHSAVPLRKWSKSGWHAESDGSIACPKADNECDHGFLELKTMLPPNCVSELVCKATQLKETIELKDAKETLDNSCSCLKSVTNNADDISDNIRKLAFREHSDDNFLYRPKAVDLHNHEKDLRHFQWHWRKGEPVIVSNVLESCTSGLSWESHVMWRTFHQISDTDHNSFFNVKAIDCLDWCEGSFNAHHFFTGYTNGRKDQLDWPQLLKLKDWALNLSEEQLPHHCAEFISSLPYKEYTDPFKGALNLAVKLPDNVHMRPYIAYGFAQELGRGDSVTKLHCNMSDVVNVLTHIAKVEPETANIAAIKNLKQKHLEQDKRELHGDNQHGDTNFDMLDDSSSSITASDEKNSLDGALWDIFRREDEPKLKEYLNKHFREFRHVHCSPLKQVIHPIHDQTFYLTIEHKKRLKEEYGIKPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECVRLTEEIRKLPVNHSSVHDKLEVKKMIIHAMLDVVKKMDKESERPTELRYRFTCNRLAIFQYKWELKVSMATAKGKSVLHFPKFISDECSLRRGQQIHVVCDNTKETTCCDVMKNGTKPPQYHIGRGWYEFVRKLKLKNGDKIVFTLDNPPRVLNVRAVRCTQS 907
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03387 907 ProSiteProfiles JmjC domain profile. 513 751 IPR003347 -
Trre10g03387 907 Gene3D Cupin 389 760 - -
Trre10g03387 907 MobiDBLite consensus disorder prediction 616 630 - -
Trre10g03387 907 Pfam JmjC domain, hydroxylase 627 734 IPR003347 -
Trre10g03387 907 SMART cupin_9 506 751 IPR003347 -
Trre10g03387 907 Gene3D - 809 905 IPR015300 -
Trre10g03387 907 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 29 785 IPR045109 GO:0032454|GO:0033169
Trre10g03387 907 SUPERFAMILY Clavaminate synthase-like 402 773 - -
Trre10g03387 907 MobiDBLite consensus disorder prediction 605 630 - -
Trre10g03387 907 SUPERFAMILY DNA-binding pseudobarrel domain 816 894 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03387 Trre-Chr10 43485170 43490081 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre10g03387 JmjC 1.6e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03387 K15601 - gmx:100805723 780.015