Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03371 ATGAAAGCAGGGAAATTGAATCATGATGAAGATGAATATGATGATGAAGATTTCAATGCTTCCAAAAAACAAGGCACTTCCTCTGCCCCTAACACCAATAAAGCAGATGGAAAAGCTACTGATAAGGCTAGTGTAATAAGATCGAAACATTCTGTAACCGAGCAGCGAAGAAGAAGCAAGATAAATGAGAGATTCCAAATATTGAGGGATCTCATACCTCAATGTGATCAAAAGAGGGACACAGCATCATTCTTATTGGAGGTGATTGAGTATGTTCGGTACTTACAGGAGAAGGTACAAAAATATGAAGGCTCGTATCAAGGTTGGAGTCAAGAGCCGTCGAAGTTAATGCCTTGGAGAAATAGCCATTGGCGTGTCCAAAACTTTGTTGGTCAACCTCCAGTTGTAAAGAATGGTTCAGGTCCAGTATCACCATTTCCCGGAAAGTTTGACGAAAGCAATGTTAGTATCTCTCCAACTATGCTTAGTGGCACTCAGAGTATGATAGATCATGATCTGAGTCGGGATATTATCGGAAAAACAATGGAGAGGCAACCCGATTTAGCAAGAAAGGGAATTTCTCTGCCCATGGCTATGCATTCAAACATGTCTGTTCCTGTCAGAAGTGATGGTGTACTTTCCCATCCTCTTCAGGGAACTGTTTCCGATGCACAATCAACAGAATGTCCCGCAACTAGTGCACAACTGAATCAGCAGGATGAACTGACGGTTGAAGGAGGGACAATCAGCATCTCGAGTGTATACTCCCAAGGGTTGTTGAACAATCTAACTCAAGCGCTACAGAGTGCTGGGTTAGATCTGTCGAAGGCTAACATTTCAGTTCAAATTGATCTCGGGAAGCGTGCAAACAAAGAGCCAGGTGGCACCTCTTCTCCGAAGGATCATGATAATCCTCTTTCTAGCAATCAATCAATTGCACATTTTAGAGATGCTATCATTAGAGAGAATTCAGATCAAGCTCAAAAAAGAATGAAAACATACAAGTGA 1008 0.4187 MKAGKLNHDEDEYDDEDFNASKKQGTSSAPNTNKADGKATDKASVIRSKHSVTEQRRRSKINERFQILRDLIPQCDQKRDTASFLLEVIEYVRYLQEKVQKYEGSYQGWSQEPSKLMPWRNSHWRVQNFVGQPPVVKNGSGPVSPFPGKFDESNVSISPTMLSGTQSMIDHDLSRDIIGKTMERQPDLARKGISLPMAMHSNMSVPVRSDGVLSHPLQGTVSDAQSTECPATSAQLNQQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSKANISVQIDLGKRANKEPGGTSSPKDHDNPLSSNQSIAHFRDAIIRENSDQAQKRMKTYK 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03371 335 MobiDBLite consensus disorder prediction 40 58 - -
Trre10g03371 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 46 117 IPR036638 GO:0046983
Trre10g03371 335 Gene3D - 42 116 IPR036638 GO:0046983
Trre10g03371 335 MobiDBLite consensus disorder prediction 300 314 - -
Trre10g03371 335 MobiDBLite consensus disorder prediction 22 38 - -
Trre10g03371 335 PANTHER BES1-INTERACTING MYC-LIKE PROTEIN 8 333 IPR044295 GO:0003700|GO:0006351|GO:0046983
Trre10g03371 335 FunFam BHLH domain class transcription factor 43 115 - -
Trre10g03371 335 MobiDBLite consensus disorder prediction 1 58 - -
Trre10g03371 335 MobiDBLite consensus disorder prediction 318 335 - -
Trre10g03371 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 95 IPR011598 GO:0046983
Trre10g03371 335 SMART finulus 51 101 IPR011598 GO:0046983
Trre10g03371 335 MobiDBLite consensus disorder prediction 287 335 - -
Trre10g03371 335 MobiDBLite consensus disorder prediction 207 226 - -
Trre10g03371 335 Pfam Helix-loop-helix DNA-binding domain 47 96 IPR011598 GO:0046983
Trre10g03371 335 CDD bHLH_AtBIM_like 44 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03371 Trre-Chr10 43319690 43325711 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03371 1 333 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G69010 54.790 1.03e-114 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g03371 HLH 3.3e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03371 - - gmx:100816055 548.125