Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03362 ATGCAAGATGGTAGTGGTGAATTCAAAACCATTACTGATGCTATTAATAGCATACCTAATGGTAACACAAAACGTGTGATTATTCATATTGGTCCTGGAAATTATAATGAGAAAATCAAAATTGAAAGGACAAAACCTTTTGTTACATTGTATGGAACACCAGAAAATATGCCAAATATTACCTTTGGTGGTACTGCAAAAAAATATGGAACAGTTGATAGTGCTACATTGATTGCTGAATCAGATTATTTTGTAGCTGCTAACATCATAATATCGAATTCTGCACCAAGACCTGATGGAAAAACGGAAGGTGCTCAAGCGGTTGCATTGAGAACTTCTGGTGACAAATCTGCATTTTATAATTGTCAATTCTTTGGATTCCAGGACACAGTTTGTGATGATAGACATAATCATTTTTTCAAAGATTGTTTAATCCAAGGCACAGTGGATTACATATTTGGAAGTGGGAGATCGAGCATAATTATCCGCGATACTTTAACTGTGCACAAACGCTCCTTGTCAGAAACAATTGATATTTAA 540 0.3481 MQDGSGEFKTITDAINSIPNGNTKRVIIHIGPGNYNEKIKIERTKPFVTLYGTPENMPNITFGGTAKKYGTVDSATLIAESDYFVAANIIISNSAPRPDGKTEGAQAVALRTSGDKSAFYNCQFFGFQDTVCDDRHNHFFKDCLIQGTVDYIFGSGRSSIIIRDTLTVHKRSLSETIDI 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03362 179 Gene3D - 1 174 IPR012334 -
Trre10g03362 179 Pfam Pectinesterase 2 165 IPR000070 GO:0030599|GO:0042545
Trre10g03362 179 SUPERFAMILY Pectin lyase-like 2 159 IPR011050 -
Trre10g03362 179 ProSitePatterns Pectinesterase signature 2. 145 154 IPR033131 -
Trre10g03362 179 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 2 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03362 Trre-Chr10 43287296 43288900 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03362 6 158 Carbohydrate Esterase AT1G69940 66.667 2.21e-75 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03362 K01051 - gmx:100775404 281.567