Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03358 ATGTCTCATCCTAAAGTTGTGTTTGCTTACTCAACTTTGACCGATGTTCTTAATCCTATAGCTTGGAATAACGACTTGCACCCTGAATTTGAAAAAACTTTATACTTTGGAGAATACAAGAACACAGGACCAGGTGCAAATACTAAAGGGCGTGCACCTTTCACAAAGCAACTAAATGAAGCAGAGGTTAAACCTTTCATTACTCTTGAAATGATTCAAGCATCTAAATGGCTTCTTCCTCCTCCAAAAGTCTAA 255 0.3765 MSHPKVVFAYSTLTDVLNPIAWNNDLHPEFEKTLYFGEYKNTGPGANTKGRAPFTKQLNEAEVKPFITLEMIQASKWLLPPPKV 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03358 84 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 4 78 - -
Trre10g03358 84 Pfam Pectinesterase 5 74 IPR000070 GO:0030599|GO:0042545
Trre10g03358 84 SUPERFAMILY Pectin lyase-like 3 78 IPR011050 -
Trre10g03358 84 Gene3D - 1 81 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03358 Trre-Chr10 43274217 43275755 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03358 1 84 Carbohydrate Esterase AT5G07410 48.810 2.82e-27 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03358 K01051 - gmx:100786427 130.183