Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03333 ATGAGTGACAAAGAAAAGTTTGAGGTGGATGGAAATGGGGAGCCTATGAGTTATTCTAATGGTATGCCTCCTGATTGGAGATTTGGTGGTGGCGGCGGCGGTGGCGGTGGTGGTAATCTTGTAAATTCATCTCTTGGGTTGGTTTCTATTGGGAATTCTATGAATATCAATAGAGAGGATTTAATTGGTTCTTCTTCATGTTCTTCTGCCTCAATGGTGGACTCATTTAGTCCTAACTTTTGGGACCATTCAGCAAATTCTCAAAATTTGGGGTTTTGTGATATCAATGGGAGTTCTTCAAATACAATTGGAATTAGAAAAGACGGGTTTGGTTTCGGAAGAGGTGGTCATGATCACGGAACACTTGAAGTTGGTTGGAACCAAGCTAATTCTATGATGAAAGGGGATGGTTTTTTAGTGAATGGTGGACAAGGGGTTTTTACTCAGAGTTTATCTCAGTTTCCAACTGATTCTGGATTTATTGAAAGGGCTGCGAGGTTCTCGTGTTTCGGTGGAGGGAATTTCGGTGATGTTGTGAACTCGTATGGGATTCCTCAATCTATGGCTATGTATGCTGGTACAATTCATGGAGCTAGAGATGCTCTTGCAGGCATTGGATTGAAAGTTGGAACTGTAGGACAGTCTCAAGAAAGTGATGATCCTAAGGTAGTTGAAGGTACGAAAGGCGTGTCTCCGTCTGTTGAGCAATTGGCTACTAGAGGAAGCCCTTTAAAGAATGATAAAAGTGAGAGTCGCGTCGTGTCTCAAGATGACGGGAAGCAAGCTCTTGTTAGGAATGTTAATGATTCCGACAGAGGTGAATCAGGTGACGACGATGGTGGTGGACAGGAAGGTTCTGCGATGATGGAGGGTACTACAAGCGGAGAACCTTCGATTAAAGGATTAAATTCGAAGAAAAGGAAAAGAAATGGACAAGATGCTGATAATGATAAAGACGATGGAGCTCGAGAATTACAAAGTGAAGGTGCAAAGGACAATCCCGAGAATCAACAGAAAGGAGACCAAACCAAGGCTTCTGGAAAGAATGCCAAACAGGGCTCTCAAACTTCTGATCCACCTAAGGAAGAATACATCCATGTTAGGGCTCGACGAGGCCAAGCAACAAACAGTCATAGCCTTGCAGAGAGGGTGAGGAGGGAAAAGATAAGTGAGAGAATGAAGTTTCTTCAAGAACTTGTTCCCGGATGCAGCAAGGTCACCGGCAAGGCAGTGATGCTGGATGAAATCATCAATTATGTACAGTCACTTCAACGGCAGGTTGAGTTTTTGTCGATGAAACTTGCAACAGTAAATCCACGGATGGATTTGAATATTGAAAGCCTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCATCCGCACTAGGGTTTCCTCTAGATATGTCTATGAATTTTCCACCATTACATCCATCTCAATCCGGGATGATTCACTCAGTTATTCCAAACATGACAAACCCGTCCGATATCCTTCGAAGAACTATTCATCCACAGTTAACACCCTTAACTGGAGGATTCAAGGAGCCAAGTCAGATGCCGGATGTATGGGAGGACGAGCTTCATAATGTTGTACATATGAGCTTTGCAACAACTGCTCCCTCGACTAGCCAAGATGTAGATGGTACAGCGGCAGCAAATCAGATGAAAGTTGAACTTTGA 1683 0.4349 MSDKEKFEVDGNGEPMSYSNGMPPDWRFGGGGGGGGGGNLVNSSLGLVSIGNSMNINREDLIGSSSCSSASMVDSFSPNFWDHSANSQNLGFCDINGSSSNTIGIRKDGFGFGRGGHDHGTLEVGWNQANSMMKGDGFLVNGGQGVFTQSLSQFPTDSGFIERAARFSCFGGGNFGDVVNSYGIPQSMAMYAGTIHGARDALAGIGLKVGTVGQSQESDDPKVVEGTKGVSPSVEQLATRGSPLKNDKSESRVVSQDDGKQALVRNVNDSDRGESGDDDGGGQEGSAMMEGTTSGEPSIKGLNSKKRKRNGQDADNDKDDGARELQSEGAKDNPENQQKGDQTKASGKNAKQGSQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNIESLLAKDILHQRPGPSSALGFPLDMSMNFPPLHPSQSGMIHSVIPNMTNPSDILRRTIHPQLTPLTGGFKEPSQMPDVWEDELHNVVHMSFATTAPSTSQDVDGTAAANQMKVEL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03333 560 MobiDBLite consensus disorder prediction 264 279 - -
Trre10g03333 560 Gene3D - 370 444 IPR036638 GO:0046983
Trre10g03333 560 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 373 423 IPR011598 GO:0046983
Trre10g03333 560 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 261 477 IPR024097 GO:0006355
Trre10g03333 560 MobiDBLite consensus disorder prediction 301 338 - -
Trre10g03333 560 CDD bHLH_AtBPE_like 363 448 - -
Trre10g03333 560 SMART finulus 379 429 IPR011598 GO:0046983
Trre10g03333 560 MobiDBLite consensus disorder prediction 339 359 - -
Trre10g03333 560 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 371 442 IPR036638 GO:0046983
Trre10g03333 560 MobiDBLite consensus disorder prediction 1 33 - -
Trre10g03333 560 Pfam Helix-loop-helix DNA-binding domain 376 424 IPR011598 GO:0046983
Trre10g03333 560 FunFam Basic helix-loop-helix transcription factor 370 442 - -
Trre10g03333 560 MobiDBLite consensus disorder prediction 212 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03333 Trre-Chr10 42955139 42957919 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03333 59 559 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.665 4.70e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g03333 HLH 6.3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03333 - - tpra:123911592 973