Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03306 ATGGCAAACGATACTTCTAGTCCTGATTCCCATCATAAACGTCTTGGTCTTTTAAAAGATCAAGTTCATTTGGTTAAAAGGAAAGACTGTAATCGCTATGAGATTGCTTCAATACAAGATCATCTATCATTTGAGAAGGGGTTTTTTATAGTAATTCGCGCATGCCAATTGTTAGCCCAAAAGAATGATGGAATAATATTGGTTGGTGTGGCGGGTCCTTCAGGAGCAGGAAAGACCATATTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCTGTCATTTCAATGGATAATTACAATGATGCTAGTCGAATTGTTGATGGAAACTTTGATGATCCACGCCTAACTGACTATGACACATTGCTCCAGAATTTACATGATTTAAAGGAAGGAAAGACAGTCCAGGTTCCGATATATGATTTCAAGTCCAGTTCACGTATAGGATACAGGACTGTAGAATCCCCGAGCTCCCGTATTGTGATTATAGAGGGTATCTATGCCTTGAGTGAGAAGTTGCGAACTTTGCTGGACCTTCGAGTTTCTGTTACAGGTGGAGTTCACCTTGACCTTGTAAAGAGAGTGATACGTGATATACAACGTGCAGGCCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTATATCCAATGTACAAGGCTTTTATTGAGCCAGATCTTAAGACGGCACATATAAAAATCATTAACAAATTTAACCCATTTACTGGATTCCAGAGCCCTACTTACATATTAAAGTCAGCAAGAAATGTAGAAGTTGATAAAATTAAAGCTGTTCTCTCTGATGACTTTAAGGAAACAACTGAGCAAACTTATGACATATATCTTCTACCTCCCGGTGAAGATCCAGAAACTTGCCAATCATATTTAAGGATGCGAAACAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACAGATAATCCCTTTGTCATATCCCCAAGAATTACTTTTGAGGTCAGTGTGCGCCTCCTTGGTGGACTAATGGCTTTGGGATATACGATAGCTACTATCCTTAAGAGAAACAGCCATGTCTTTTCTGATGATAGGGTTTGTGTGAAACTAGATTGGCTTGAGCAACTTAATCGACATTATGTTCAGGTACAAGGGAGAGATCGCTTAACTTTGAAAGACATAGGAGATCAGCTGGGTCTCGAAGGTTCCTACATTCCTCGTACATACATTGAGCAAATTCAACTTGAAAGGCTTGTGAATGAGGTTATGGCCCTACCAGATGATTTGAAGACAAAGCTCAGCCTAGATGAGGATTTGGTTTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGACAGGGTTGCCATGAGAAATAAGAATATGACAAGAGGATTGTCACAGTCATATACAAATCAAAGGGACAAAAATGCAGCCAAAGTTAATGGATATTTTACCAACAATCGAAGGTTTGGTGAAAGAAATTCGGATTCTTCGCCAACACAAGTAAATCAGGGAGCCATCAGTCAGCTTTCAGAACAGATTTCTGCCCTCAATGATAGAATGGATGAATTTACAAATCGAATTGAAGAGCTGAATTGCAAGCTATCCATTAAGAATAATTCTCCAAGCCAACAAAATATGTCAGCTCAAGCCGAAGCCTGCAATGGTTCTGCTCCTACGTCTTACTTCATCAACAGTTTGGGCAATGGTAGCATAACTGGTTCTAAGATGCCACATTCCTCGTCTTCATCGCAATTAAATAAGGACTCTCCTTTAATGGATGAGATATCAGGCATTGCACGTGGCCAGCGTCAAATTATGCATCAAATGGACAATCTTAATAATCTTCTCCGGGGTAGCTTAGTGGAGAAGTCTCAGCAAACAAGAACCAACCCGAAAAGCATAACTACAGATTCAAATTCCATTGCAGCTAGTGTTATAGTGGTAGTAGCAGTTGGTTGTTTGGGGATCTTCTTGATGAACGGTTTTTGGACCAGAAAGTGA 1992 0.4001 MANDTSSPDSHHKRLGLLKDQVHLVKRKDCNRYEIASIQDHLSFEKGFFIVIRACQLLAQKNDGIILVGVAGPSGAGKTIFTEKILNFMPSIAVISMDNYNDASRIVDGNFDDPRLTDYDTLLQNLHDLKEGKTVQVPIYDFKSSSRIGYRTVESPSSRIVIIEGIYALSEKLRTLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLKTAHIKIINKFNPFTGFQSPTYILKSARNVEVDKIKAVLSDDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLTLKDIGDQLGLEGSYIPRTYIEQIQLERLVNEVMALPDDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKNMTRGLSQSYTNQRDKNAAKVNGYFTNNRRFGERNSDSSPTQVNQGAISQLSEQISALNDRMDEFTNRIEELNCKLSIKNNSPSQQNMSAQAEACNGSAPTSYFINSLGNGSITGSKMPHSSSSSQLNKDSPLMDEISGIARGQRQIMHQMDNLNNLLRGSLVEKSQQTRTNPKSITTDSNSIAASVIVVVAVGCLGIFLMNGFWTRK 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03306 663 PRINTS Uridine kinase signature 65 82 - -
Trre10g03306 663 PRINTS Uridine kinase signature 132 147 - -
Trre10g03306 663 PRINTS Uridine kinase signature 188 198 - -
Trre10g03306 663 PRINTS Uridine kinase signature 224 237 - -
Trre10g03306 663 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Trre10g03306 663 Pfam CYTH domain 268 404 IPR023577 -
Trre10g03306 663 SUPERFAMILY CYTH-like phosphatases 268 407 IPR033469 -
Trre10g03306 663 Coils Coil 503 537 - -
Trre10g03306 663 CDD UMPK_like 67 239 - -
Trre10g03306 663 PANTHER URIDINE KINASE 16 423 - -
Trre10g03306 663 Gene3D - 254 412 - -
Trre10g03306 663 Gene3D - 66 247 IPR027417 -
Trre10g03306 663 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Trre10g03306 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 236 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03306 Trre-Chr10 42621199 42631508 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03306 66 236 PRT Gene Family AT5G40870 27.222 7.78e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03306 K00876 - gmx:100797542 1141.72