Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03302 ATGTCGTCTTCGGCCCCTCTCGTCTTAGATAACTTTTGTCAATTTTGGAAATTAGAGTTCACCTATGACTCTAAAGTGGAGGAAAGCGTATCTGGTTTGATAAAAAGTTTACCGAATATTCAGAGGCTCACTCTAGAATCATATCGCGACAAGACGCTCTATGCAGATATCATTTCTCCTTCACATCTGATAAGCTTAAAGTATCTGGAATTAGATTGTGTGAATTTGGATGAAAGAGGAGAGCTTTTGTATATTGTCAGTGTACTCAAAGGTGCTTCTAACCTGGTGGAACTTGTTATAGAGAGTAACAACGGTAATGGTGAACAAGAGCCTGACCAATTGGAGGAGCTTGGATTGAAATACTTGGAGCTCCTATCAGGTGTTAATGGTGCAAACTTCATTGCAAAGGATGTTGGCTTCGAAAACACAGCAGGACCAGACAAACGTCAAGCAGTTGCACTCCGAGTAACAGCCGATCAATCAATCATCTATAACTGTCAAATAGACGGTTACCAAGCCACACTCTTCACCGAATCTCAACGCCAATTCTTCCACGAACAACAATGTAACGTAGCCGCCAACGGAAGAACCAAAGCCGATAGCGCAAGTGGCTTTGTTTTCCAAAGTTGCCACTTCACAGGTGAACCAGAAGTAGCCAAGATTGATCCCAAAATATCATACCTAGGAAGACCATGGAAAGCATACTCCAAAGTTGTGATTATGGATTCAGAAATTGATGGCATTTTTAGCCCTGAAGGTTACTTGCCATGGATGGGAAGTGCTTTTACTGATACATGTACTTTCTATGAGTATAACAATAAAGGTCCTGGTGCAGATACATCAAAGAGAGTTAAATGGCCTGGTGTTAAGACTATTTCAGCTACTGAAGCAGCTGCTTATTACCCTGGCAAATTCTTTGAGCTTGCTAATTCATCTGATCGTGATTCGTGGATTGTGAAATCTGAGGTTCCTTATCCACTTAGTGCTTTGGATGCTAAAACTAATCCTCTTGATCCTTCCGGTGGTCATGGAGCTGGAGCCGGAGCTGGAGCAAAGAGTAGTGGTTTGGTTAACAAAGCTAGATCCAACCCTGAAGTTGTCCATGAGATTTGCTGGACAATTTCTTTGATTTCCGGTATTTAA 1143 0.4182 MSSSAPLVLDNFCQFWKLEFTYDSKVEESVSGLIKSLPNIQRLTLESYRDKTLYADIISPSHLISLKYLELDCVNLDERGELLYIVSVLKGASNLVELVIESNNGNGEQEPDQLEELGLKYLELLSGVNGANFIAKDVGFENTAGPDKRQAVALRVTADQSIIYNCQIDGYQATLFTESQRQFFHEQQCNVAANGRTKADSASGFVFQSCHFTGEPEVAKIDPKISYLGRPWKAYSKVVIMDSEIDGIFSPEGYLPWMGSAFTDTCTFYEYNNKGPGADTSKRVKWPGVKTISATEAAAYYPGKFFELANSSDRDSWIVKSEVPYPLSALDAKTNPLDPSGGHGAGAGAGAKSSGLVNKARSNPEVVHEICWTISLISGI 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03302 380 Pfam Pectinesterase 186 306 IPR000070 GO:0030599|GO:0042545
Trre10g03302 380 Gene3D - 189 330 IPR012334 -
Trre10g03302 380 Gene3D - 89 188 IPR012334 -
Trre10g03302 380 SUPERFAMILY Pectin lyase-like 128 306 IPR011050 -
Trre10g03302 380 SUPERFAMILY RNI-like 11 116 - -
Trre10g03302 380 PANTHER PECTINESTERASE 128 187 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03302 Trre-Chr10 42597734 42604814 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03302 121 325 Carbohydrate Esterase AT5G49180 40.506 3.57e-59 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03302 K01051 - gmx:100784682 302.753