LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre10g03293	ATGGAAATGAAAGGAGATATAGCTTTGTTTTGTTTAGCTTTGTTCTTCTTGTGGACTTCAGTAACTGGTTTACTTTCTTCTAAAGGTGTCAACTATGAAGTTCAAGCTTTGATTGGAATTAAGAATTCTTTGGTTGATCCTCATTCTGCTTTGAATAATTGGGATGCTGAGTCTGTTGATCCTTGTAACTGGGCTATGGTCACTTGTTCTCTTGATCATTCTGTTGTTGTCCTTGGAATTCCAAGCCAGAATATATCTGGTACTCTCTCATCAAGCATAGGTTCCTTACCAAACCTTCAAACTGTGCTGTTGCAGGATAATAATATCACAGGACCAATTCCTTCTGAGATTGGAAAGCTTCAAAAGCTTCAAACTCTTGATCTTTCCGACAATTTCTTCACCGGTCAACTTCCAGAATCTCTTTCTCATATGAAGAGTCTTCATTATTTGCGGCTAAACAATAACAGTCTTTCCGGACCAATTCCTTCATCAGTGGCTAACATGTCACAGCTTGTCTTTCTGGATCTTTCTTTTAATAACTTGAGTGGTCCTGTACCTAAATTAAATGCTAAAACATTCAATATTGTAGGCAATCCTCAGATATGTGCAACTGAAGTTAAACAAAACTGTTTTAGAACAACATTAATTTCTTCTGTTATGAATAATAACTCTCAAGGTTTACAATCCTCTAATAGACCAAAAAGTCACAAAGCTGCCTTAGCTTTTGCTTCAAGCCTAAGCTGCATCTGCTTACTAATTCTGGGATTCGGCTTCCTTCTCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTCGACACAAATGAACAATATCGCGAAGAGATTTGCCTTGGAAACTTGAAGAAATTCCATTTCAGAGAACTTCAAGTTGCTACAAATAACTTTAGCAGCAAAAACTTAGTTGGAAAAGGTGGTTTCGGCAATGTTTACAAAGGTTGTCTCCGAGATGGTACGGTTATAGCAGTAAAACGGCTCAAAGATGGTAATGCCGTTGGTGGTGAAATCCAATTCCAAACTGAACTAGAGATGATAAGCTTAGCTGTTCATAGGAATCTTCTTCGCCTGTATGGGTTTTGCACGACAGCTACAGAGAGGCTCTTGGTTTATCCTTATATGTCAAATGGTAGTGTTGCTTCTCGTCTAAAAGGAAAGCCATCTCTGGATTGGGGTACAAGGAAGAGAATTGCATTAGGAGCGGGACGAGGCTTACTATATTTACATGAACAATGTGATCCGAAGATTATTCATAGAGATGTAAAAGCAGCAAATATATTACTTGATGATTATTGTGAAGGTGTAGTAGGAGACTTTGGTTTAGCAAAACTATTGGACCACAGAGATTCACATGTGACAACAGCTGTTAGAGGAACTGTAGGACATATAGCTCCTGAGTACCTATCAACAGGACAATCCTCAGAGAAAACAGATGTATTTGGATTTGGAATTCTTTTACTTGAATTGATTTCTGGACAAAGAGCTCTTGAATTTGGGAAAGCTGTTAACCAGAAAGGAGCTATGCTTGATTGGGTAAAGAAAATACATCAAGAGAAGAAAATCGACGTGTTAGTTGACAAGGATCTGAAAAACAACTACGACAGGATAGAATTAGATGAAATAGTTCAAGTGGCTCTTTTATGTACTCAGTACCTACCAAGTCACAGACCAAAAATGTCAGAAGTTGTTAGAATGCTTGAAGGAGATGGACTTGCAGAGAAATGGGAAGCTTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCGTCTTCAGAACGTTATTCTGATCTTACCGATGACTCTTCGTTGCTTGCACAAGCAATGGAACTTTCTGGACCAAGATAA	1869	0.3826	MEMKGDIALFCLALFFLWTSVTGLLSSKGVNYEVQALIGIKNSLVDPHSALNNWDAESVDPCNWAMVTCSLDHSVVVLGIPSQNISGTLSSSIGSLPNLQTVLLQDNNITGPIPSEIGKLQKLQTLDLSDNFFTGQLPESLSHMKSLHYLRLNNNSLSGPIPSSVANMSQLVFLDLSFNNLSGPVPKLNAKTFNIVGNPQICATEVKQNCFRTTLISSVMNNNSQGLQSSNRPKSHKAALAFASSLSCICLLILGFGFLLWWRQRYNKQIFFDTNEQYREEICLGNLKKFHFRELQVATNNFSSKNLVGKGGFGNVYKGCLRDGTVIAVKRLKDGNAVGGEIQFQTELEMISLAVHRNLLRLYGFCTTATERLLVYPYMSNGSVASRLKGKPSLDWGTRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEGVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKAVNQKGAMLDWVKKIHQEKKIDVLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	622

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre10g03293	622	MobiDBLite	consensus disorder prediction	579	622	-	-
	Trre10g03293	622	ProSiteProfiles	Protein kinase domain profile.	302	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g03293	622	SUPERFAMILY	L domain-like	32	195	-	-
	Trre10g03293	622	Pfam	Protein kinase domain	303	569	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g03293	622	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	12	582	-	-
	Trre10g03293	622	SMART	serkin_6	302	557	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre10g03293	622	SUPERFAMILY	Protein kinase-like (PK-like)	281	572	IPR011009	-
	Trre10g03293	622	Gene3D	Transferase(Phosphotransferase) domain 1	379	591	-	-
	Trre10g03293	622	MobiDBLite	consensus disorder prediction	589	613	-	-
	Trre10g03293	622	FunFam	Somatic embryogenesis receptor-like kinase 1	379	591	-	-
	Trre10g03293	622	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	30	212	-	-
	Trre10g03293	622	Pfam	Leucine rich repeat N-terminal domain	31	70	IPR013210	-
	Trre10g03293	622	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	421	433	IPR008271	GO:0004672\|GO:0006468
	Trre10g03293	622	Gene3D	Phosphorylase Kinase; domain 1	271	378	-	-
	Trre10g03293	622	Pfam	Leucine rich repeat	122	181	IPR001611	GO:0005515
	Trre10g03293	622	FunFam	Somatic embryogenesis receptor kinase 1	271	378	-	-
	Trre10g03293	622	ProSitePatterns	Protein kinases ATP-binding region signature.	308	330	IPR017441	GO:0005524
	Trre10g03293	622	Gene3D	Ribonuclease Inhibitor	30	212	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre10g03293	Trre-Chr10	42522156	42526664	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre10g03293	1	622	Receptor kinase-like Gene Family	AT5G16000	71.044	0.0	912

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Trre10g03293		Pkinase	9.8e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre10g03293	-		-	gmx:100790194	1084.71