Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03288 ATGGAGACGACTCAGTCGACGGAACACACAACATCACAACATGACGACATACAGATGGACAACTCTGATGAATTTTCAGATGTTAATTTCAATGAGGATGAAGATGATGAACATTCGACTTCTGCCGAAGAAAGTGAAAGTATAGAGCATACAGACCACAATATATGTGATGATAACATTGAGAATTCTGATTCTGTTGCAATAGATGGTAGGTTTGTTAGGATTAATACCATGACGGCAAATGATATTGAGGGTCTTGATTTTGGTAGTGAAAAAGAAGCTTATGACTTTTATGTAAAGTATGCAAAATGCACCGGTTTTGTTGTCAGGAAAGATTTTGTGAACAAAAATGTTAGGGGAACGATTGTAACGCGACAATTTGTGTGCAACAGACAAGGACCAATAAATCCAGCCGAGTTCGAAGACAATGACTATCCTCTTTTACCAAAGTGTCATCCTCTTTCAGGCAGTTCATGGCCATTTGTGTCTTTGAATGCTAGAGACACTGCACTGACATCATACATATTTATGTGTGATGATCAAAATCAGTATGGGGATGAAATTCTTGTAAAAACTAAATTTTGGACCGTGGGCGAGAGAACAAATTTGAAAACTCTAAAGCCTCCTTGTTTTATTGATCAGGAGGTCATAAATATTTTATGTTGCAAACTAAATTATGAAGAAAACATTGTTTCAAAACCAATATCAAATTGGTATCTACCGCCTATGTTCACGCAATACGCGTTGACAAAGCCAAATTCTCATGAGAAGGTCATGCAATTTTATCAAAAGGATTTTATGGGGAAAGTTTACCGCACCAGCAAGATTTTCATTCCTATGAATGATCAAAATTTGCATTGGTATCTCATGATTGTTGACATGGTTGATCATCAAATATATCTGTTGGATTCGCTACCATGTGAAAATAGAAAGTGGTCAAGACGAAGAGATGTCTTGAAAGTGGCGATATTTTTGACGGAGATGTTGATGCATAATTCTTTTTATGAGCGTGTACTCCAACTTGATAGATCTAAGCCAATGATCCATAATTATCCAATTGTGGAACCTAGAGGGCTCCCGAGTCAGAAATGTGGATCTAACGATTGCGGAGTCTTTGTCGCAACTTGGATGCAAGAGCATGGCGTGTATGACGACTATACCTTCATAAAAGTATGCCCAGATGCAAGGATCAAGCTTGCGCTTAATGTGGTTTATAGTAGTTACAATGAACTTATGGATGAAGTTGAGGAAAAGGCACACAATCATTGGAAAAATATGAAGAAAATTGCTTAG 1293 0.3743 METTQSTEHTTSQHDDIQMDNSDEFSDVNFNEDEDDEHSTSAEESESIEHTDHNICDDNIENSDSVAIDGRFVRINTMTANDIEGLDFGSEKEAYDFYVKYAKCTGFVVRKDFVNKNVRGTIVTRQFVCNRQGPINPAEFEDNDYPLLPKCHPLSGSSWPFVSLNARDTALTSYIFMCDDQNQYGDEILVKTKFWTVGERTNLKTLKPPCFIDQEVINILCCKLNYEENIVSKPISNWYLPPMFTQYALTKPNSHEKVMQFYQKDFMGKVYRTSKIFIPMNDQNLHWYLMIVDMVDHQIYLLDSLPCENRKWSRRRDVLKVAIFLTEMLMHNSFYERVLQLDRSKPMIHNYPIVEPRGLPSQKCGSNDCGVFVATWMQEHGVYDDYTFIKVCPDARIKLALNVVYSSYNELMDEVEEKAHNHWKNMKKIA 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03288 430 SUPERFAMILY Cysteine proteinases 194 389 IPR038765 -
Trre10g03288 430 MobiDBLite consensus disorder prediction 43 59 - -
Trre10g03288 430 MobiDBLite consensus disorder prediction 1 59 - -
Trre10g03288 430 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 8 133 - -
Trre10g03288 430 Pfam FAR1 DNA-binding domain 96 134 IPR004330 -
Trre10g03288 430 MobiDBLite consensus disorder prediction 26 42 - -
Trre10g03288 430 ProSiteProfiles Ubiquitin-like protease family profile. 196 380 IPR003653 GO:0006508|GO:0008234
Trre10g03288 430 Gene3D Adenoviral Proteinase; Chain A 164 404 - -
Trre10g03288 430 Pfam Ulp1 protease family, C-terminal catalytic domain 272 385 IPR003653 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03288 Trre-Chr10 42439818 42443672 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Trre10g03288 Peptidase_C48 1.4e-09 CL0125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03288 - - ccaj:109789341 222.246