Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03287 ATGATGTTAACAATGGAAGAGGTACTTTGTGAACTAAGTGAGCATGAGAAGAAAAATGAACAAGGTTTGCCACCTGGGTTTAGGTTTCATCCAACTGATGAAGAACTCATTACCTTTTATTTGGCTTCTAAGGTTTTCAAAAATACTTGTTTCAACAATGTCAAATTTGCTGAGGTTGATCTCAACAGATGTGAGACATGGGAACTTCCAGAAATGGCAAAGATGGGGGAAAGAGAATGGTATCTATTCAGCTTAAGAGACAAAAAATACCCAACTGGACTGAGAACAAACAGAGCAACCGGTGCTGGTTACTGGAAAGCCACCGGAAAAGACAAAGAAGTTTACAGCTGCAGTAATAATAGATCCTCTTTACTACTACTAGGCATGAAGAAGACTCTTGTTTTCTACAAAGGAAGGGCCCCTCGTGGTGAAAAGACCAAATGGGTCATGCATGAGTACCGTTTAGATAATCACTTTTCACCTTCTCATCATCCTCATACCTGCAAGGAAGAGTGGGTGATATGTAGGATATTTCATAAATCAGGAGAAAAGAGAAATTCAATACTCCAACTTCAAGCTGGTAATGCTAATTATAATTTACCGTCCAAAAAAAGTTGTTTACCACCACCTCCACATTTAATCACTAATCCAACTTCATTTACACAATTAGACCAAAATGACCAATTAATCTCCTCACATTCTCATAACATTTTCCCATTGCAACCATTCCAACCTTCTTCTTTCCAAATCAACCACACCTGCAGAAACAACAATCTTCCATCTTCTGAACTACTTTTCAAGCCACAACAAAATTTCAACATGAAACAAACCATTCCAAAATCAGAGGCTACATTCTATGATCAATACCAATCATCACAGTCAATTGATGATGCTATTAACCTGAGATGGATTGACAATAATAATAATAATAATTCAATTAATAATAATAATAATAATAATAATAATAATCATAATTTTGAAAACTCTTCTTCATTCCTTATTGAGATGGATGCAGAATTGATTGAATTCTCAGGAGCTGCTACAAATGCTGAATTTAGGGACATGTCAACTTCAACAAACTTTAACAGTAACAGAATAGGCTTAGATGTTCCTATGGGAATAGATTCTTGGCCACAGGCACAACTTGTCTAA 1152 0.3594 MMLTMEEVLCELSEHEKKNEQGLPPGFRFHPTDEELITFYLASKVFKNTCFNNVKFAEVDLNRCETWELPEMAKMGEREWYLFSLRDKKYPTGLRTNRATGAGYWKATGKDKEVYSCSNNRSSLLLLGMKKTLVFYKGRAPRGEKTKWVMHEYRLDNHFSPSHHPHTCKEEWVICRIFHKSGEKRNSILQLQAGNANYNLPSKKSCLPPPPHLITNPTSFTQLDQNDQLISSHSHNIFPLQPFQPSSFQINHTCRNNNLPSSELLFKPQQNFNMKQTIPKSEATFYDQYQSSQSIDDAINLRWIDNNNNNNSINNNNNNNNNNHNFENSSSFLIEMDAELIEFSGAATNAEFRDMSTSTNFNSNRIGLDVPMGIDSWPQAQLV 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03287 383 FunFam NAC domain-containing protein 100-like 32 184 - -
Trre10g03287 383 Gene3D NAC domain 32 185 IPR036093 GO:0003677|GO:0006355
Trre10g03287 383 ProSiteProfiles NAC domain profile. 23 180 IPR003441 GO:0003677|GO:0006355
Trre10g03287 383 Pfam No apical meristem (NAM) protein 24 155 IPR003441 GO:0003677|GO:0006355
Trre10g03287 383 SUPERFAMILY NAC domain 18 180 IPR036093 GO:0003677|GO:0006355
Trre10g03287 383 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03287 Trre-Chr10 42437147 42438298 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03287 1 189 NAC Transcription Factor Family AT1G76420 71.429 4.21e-94 283
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre10g03287 NAM 3.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03287 - - gmx:100780313 390.963