Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03271 ATGAGGAGGAGGAAGTTACATCTAAGCAAGATATATTCGTTTGCGTGTGGGAAACCATCATTTAAAGGCAGAGAACATTTAAAGATTGGAGAGCATGGATATTCAAGGGTGGTGTTCTGCAATGAACCAGGGAGCTTTGAAGAAGGAATTAAAAAGTATTCAGATAATTCAGTTAGGTCTACAAAGTATACTATTGCTACATTTTTACCTAAGTCATTGTTTGAGCAATTTAGGAGAGTAGCTAATTTCTATTTTTTGGTAACTGGTTCTTTGGCCTTCACAAATCTTGCTCCTTATACAACTGTTAGTGCCATCCTTCCTTTAGTTATTGTTATTGGTGCTACTATGGTCAAAGAGGGTATTGAAGATTGGCGTCGCAAAAAACAGGATATTGAGGTGAACAATAGAAGAGTTAAAGTGCATCAAGGGCATGGAACATTTGAATATACTGGGTGGAAGAATTTGAAGGTGGGACATATAGTGAAGATAATGAAGGATGAATTCTTCCCTGCAGACCTTATACTTGTTTCATCAAGTTATGAGGATGCAGTTTGTTATGTTGAGACAATGAATTTGGATGGAGAGACAAATTTGAAGTTAAAACAAGGATTGGATGTAATGGCTTCTTTACATGAAGACTTTGACTTCAGTGATTTTAGAGTTTCAATCAAATGTGAAGATCCAAATGCAAATTTATATTCATTTGTTGGTAGTATGGAGTTTAAAGATCAGCATTATCCCTTATCTCCTCAACAACTTCTTCTCAGAGACTCTAAACTTCGTAATACAGACTACATATTTGGTGTTGTCGTCTTCACTGGTCATGACACAAAGGTCATCCAAAATTCCACGGACCCCCCTTCAAAGAGAAGCAAAGTTGAAAAGAAGATGGATAAGATTATCTACTTATTGTTTTGTATTTTATTTTTTATGGCAGCTATTGGATCTGTTTTCTTTGGAATTACAACTAGAGAAGACTTGGATGACGACGATGTAATGAAAAGATGGTATCTAAGACCAGACGATTCTACAATTTTCTTTGATCCGAAAAGGGCTTCTGCTGCTGCTATGTTTCATTTTTTGACAGTCTTAATGTTATATGGCTTTTTCATTCCAATCTCATTGTATGTTTCAATAGAAATTGTCAAAGTTCTTCAAAGCATCTTCATCAATCAAGATATACATATGTACTACGCCGAAGCAGATAAACCGGCCTATGCGCGTACTTCAAACTTGAATGAAGAACTTGGACAAGTTGACACAATACTTTCAGATAAAACTGGAACACTCACTTGCAACTCAATGGAGTTTCTTAAATGTTCCATTGCTGGAGTAGCTTATGGTCGTGGTGTTACAGAGGTCGAGAGGGTCATGAATAGAAGGAATGATTCTCCTTTGATTAACGACATCAGGGATTCTCCCATTATAAATGAACCCTTACCCATCAAAGGTTTTAACTTTATAGATGAAAGGATAATGAATGGAAACTGGGTGAATGAGCCTTATGCAGATATTATCCAAAAGTTTTTTCGCTTGTTGGCAATCTGTCATACAGCCATACCAGAAGTGGATGATGATACAGGAAATGTCTTGTATGAGGCTGAATCTCCAGATGAAGCGGCATTTGTGATTGCAGCGAGAGAATTTGGTTTTGTATTCTATAAAAGGACTCAAACCAGTTTATCGATGTATGAAATGGATCCAATTTCTGGTGAAAAGGTCGAAAGGATTTACACACTTCTGAATGTGTTAGAATTCAATAGCACAAGAAAGCGAATGTCAGTGATAGTGAAAGATGAAGAAGGGAGAATTTTGTTGATGTGTAAAGGTGCAGACAGTGTCATGTTTGAAAGACTTGCCAAGGATGGAAGGGAATATGAAGAAAAAACCTTGGAAGATGTGCATGAATATGCTGATGCAGGTCTAAGGACCCTGATATTGGCATACCGTGAACTTGACGAAGAGCAATACAAGAAGTTTGATAATGAATTTTCCCAAGCAAAAATCTCAATTACTGCAAATCGGGAATCATTGTTAGATGAGTTATCAGATATGATTGAGAGTAATCTAATTCTTCTTGGTGCCACTGCTGTAGAGGATAAGCTCCAAAATGGGGTTCCTGATTGCATTGACAAACTTGCACAAGCAGGAATTAAGATATGGGTTCTCACTGGTGATAAAATGGAGACTGCCATCAATATTGGATTTGCATGTAGTTTGCTTAGACAAGGAATGAAGCAGCTTATAATTCAATTAGAGAGTCCAGAAATTAAAGCATTGGAGAAAGCCGGAGACAAAAGTGTGATTGAAAAGGCTTCAAGGGAAAATATTCGACATCAGATATCTGAAGGTGCTCAACAACTTGTTGCCTCTAGAGGAACGTCTGAGGAAGCATTTGCTCTAATTATTGATGGAAAATCACTTGCTTATGCATTAGAGGATAATACAAAGGACATGTTTCTTGATCTTGCAATTCGGTGTGCATCAGTTATCTGCTGCAGATCATCTCCTAAGCAGAAAGCACTAGTTGCTAGACTTGTCAAATTCGGAACTGGTAAAACTACATTAGCTATTGGCGATGGAGCTAATGATGTTGGAATGCTTCAAGAAGCGGATATAGGGGTTGGAATCAGTGGCGTTGAAGGAATGCAAGTATAA 2658 0.3747 MRRRKLHLSKIYSFACGKPSFKGREHLKIGEHGYSRVVFCNEPGSFEEGIKKYSDNSVRSTKYTIATFLPKSLFEQFRRVANFYFLVTGSLAFTNLAPYTTVSAILPLVIVIGATMVKEGIEDWRRKKQDIEVNNRRVKVHQGHGTFEYTGWKNLKVGHIVKIMKDEFFPADLILVSSSYEDAVCYVETMNLDGETNLKLKQGLDVMASLHEDFDFSDFRVSIKCEDPNANLYSFVGSMEFKDQHYPLSPQQLLLRDSKLRNTDYIFGVVVFTGHDTKVIQNSTDPPSKRSKVEKKMDKIIYLLFCILFFMAAIGSVFFGITTREDLDDDDVMKRWYLRPDDSTIFFDPKRASAAAMFHFLTVLMLYGFFIPISLYVSIEIVKVLQSIFINQDIHMYYAEADKPAYARTSNLNEELGQVDTILSDKTGTLTCNSMEFLKCSIAGVAYGRGVTEVERVMNRRNDSPLINDIRDSPIINEPLPIKGFNFIDERIMNGNWVNEPYADIIQKFFRLLAICHTAIPEVDDDTGNVLYEAESPDEAAFVIAAREFGFVFYKRTQTSLSMYEMDPISGEKVERIYTLLNVLEFNSTRKRMSVIVKDEEGRILLMCKGADSVMFERLAKDGREYEEKTLEDVHEYADAGLRTLILAYRELDEEQYKKFDNEFSQAKISITANRESLLDELSDMIESNLILLGATAVEDKLQNGVPDCIDKLAQAGIKIWVLTGDKMETAINIGFACSLLRQGMKQLIIQLESPEIKALEKAGDKSVIEKASRENIRHQISEGAQQLVASRGTSEEAFALIIDGKSLAYALEDNTKDMFLDLAIRCASVICCRSSPKQKALVARLVKFGTGKTTLAIGDGANDVGMLQEADIGVGISGVEGMQV 885
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03271 885 SUPERFAMILY Calcium ATPase, transduction domain A 139 281 IPR008250 -
Trre10g03271 885 SFLD p-type atpase 405 885 IPR044492 -
Trre10g03271 885 FunFam Phospholipid-transporting ATPase 114 284 - -
Trre10g03271 885 Pfam Phospholipid-translocating ATPase N-terminal 39 104 IPR032631 -
Trre10g03271 885 FunFam Phospholipid-transporting ATPase 535 693 - -
Trre10g03271 885 Gene3D - 689 885 IPR023214 -
Trre10g03271 885 SUPERFAMILY HAD-like 411 883 IPR036412 -
Trre10g03271 885 NCBIfam phospholipid-translocating P-type ATPase 53 884 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Trre10g03271 885 Gene3D - 114 284 - -
Trre10g03271 885 Pfam Cation transport ATPase (P-type) 526 619 - -
Trre10g03271 885 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 492 695 IPR023299 GO:0000166
Trre10g03271 885 Gene3D - 537 667 IPR023299 GO:0000166
Trre10g03271 885 SFLD Haloacid Dehalogenase 405 885 - -
Trre10g03271 885 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 37 884 - -
Trre10g03271 885 FunFam Phospholipid-transporting ATPase 693 885 - -
Trre10g03271 885 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Trre10g03271 885 PRINTS P-type cation-transporting ATPase superfamily signature 858 877 - -
Trre10g03271 885 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Trre10g03271 885 SUPERFAMILY Calcium ATPase, transmembrane domain M 47 417 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03271 Trre-Chr10 42293734 42297834 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03271 6 884 Primary Pumps ATPases AT1G68710 73.844 0.0 1354
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03271 K01530 - gmx:100811892 1490.71