Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre10g03263 ATGAACCATTATTTCTTGTCCCTCCAACATCATACACAAGCCTTTTCAATACAAGGGTTCCATCCTCTTCTCATCATCAACAACCATCTTGCCAAGCTTCGTACCATGTTGCCTAACACAACCAAAATAGATAAGGCTTCATTGCTGGCTGAAGTGATTAACCATGTGAAGGAACTGAAACGTCAAACATCGTTAATAGCAGAAACAAGTGAAGTGCCTAGTGAGTCTGATGAGCTAAAAGTGGATGGTAATGATGATGAGAATGGACACTTTGTGATCAAAGCCTCCTTGTGTTGTGAAGATAGATCTGATCTACTACATGATCTCATTAAGACATTAAAAGCTTTAAGGTTTCGAACTCTCAAAGCAGAGATTACCACGCTTGCTGGGCGGGTGAAAAATGTTTTGTTCATCACCGAAGATCTTGATAACGGAGAGCAACATTATGCATGTATTAACTCCGTACATGAAGCGCTTAAGGAAGTGATGAAGAAGAGTTACTACCGGTGGTGGTCACGAATTAGCTTCTGGAAATGTACGTCAAAGGAGGACTAG 555 0.409 MNHYFLSLQHHTQAFSIQGFHPLLIINNHLAKLRTMLPNTTKIDKASLLAEVINHVKELKRQTSLIAETSEVPSESDELKVDGNDDENGHFVIKASLCCEDRSDLLHDLIKTLKALRFRTLKAEITTLAGRVKNVLFITEDLDNGEQHYACINSVHEALKEVMKKSYYRWWSRISFWKCTSKED 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre10g03263 184 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 26 69 IPR036638 GO:0046983
Trre10g03263 184 PANTHER TRANSCRIPTION FACTOR BHLH30 26 166 IPR045847 GO:0003700|GO:0006355
Trre10g03263 184 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 10 59 IPR011598 GO:0046983
Trre10g03263 184 Pfam Helix-loop-helix DNA-binding domain 26 59 IPR011598 GO:0046983
Trre10g03263 184 Gene3D - 25 69 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre10g03263 Trre-Chr10 42210699 42211787 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre10g03263 26 166 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 68.493 4.12e-60 189
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre10g03263 HLH 2.9e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre10g03263 - - csin:114266912 205.297